3300029700: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37322

Overview

Basic Information

• IMG/M Taxon OID: 3300029700
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283843 | Ga0245207
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37322
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 186064096
• Sequencing Scaffolds: 14
• Novel Protein Genes: 21
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	11
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039147	Metagenome	164	N
F041208	Metagenome	160	N
F042910	Metagenome	157	N
F043413	Metagenome	156	N
F043945	Metagenome	155	N
F051934	Metagenome	143	N
F055739	Metagenome	138	N
F058154	Metagenome	135	N
F059982	Metagenome	133	N
F068811	Metagenome	124	N
F073573	Metagenome	120	N
F073574	Metagenome	120	N
F074898	Metagenome	119	N
F077320	Metagenome	117	N
F078003	Metagenome	117	N
F082715	Metagenome / Metatranscriptome	113	N
F087213	Metagenome	110	N
F091068	Metagenome	108	N
F092228	Metagenome	107	N
F095494	Metagenome	105	N
F101193	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245207_100004	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	582928
Ga0245207_100028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	328762
Ga0245207_100065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	221853
Ga0245207_100145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	141981
Ga0245207_100198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	120562
Ga0245207_100206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	117611
Ga0245207_100209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	116044
Ga0245207_100220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	112807
Ga0245207_100267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	98661
Ga0245207_100469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	61784
Ga0245207_100493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	59583
Ga0245207_100517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	56775
Ga0245207_100650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	46319
Ga0245207_101288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	21830

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245207_100004	Ga0245207_10000429	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGSKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEYKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNSDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVADLWVKGYLIDQLAIS
Ga0245207_100028	Ga0245207_100028184	F073573	MPTIVSFYQRFPNEAPSLNLSAFDHTGYTYAENFRRNERCYEAEQCEVTSDDGSVVLSLDVRIRPRGGEIEALPRVMLSVYSDGMPFQVRRMELRTGDTTYAILPDNVQQYTMRGDTDGGFLETMAIPLGKVGMKMLLEASDAAEARWVIQGARTAQTLPLTAAQKKAIHRFCMDCEESAITYQPAFLWYKDYCTKA
Ga0245207_100065	Ga0245207_100065161	F087213	MKKFSSVLLAVLLIFSCWTVATAESIDAVSGAPLDNDIEIVYKEHFDDMVTHYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADTALDARLQAILAACGLNPADYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV
Ga0245207_100145	Ga0245207_10014558	F091068	MNEKNQQVSDEQIDALIRSGLWQDEQPLTADEEKLADAAFARAMAKIDRKEKQQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWSEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
Ga0245207_100145	Ga0245207_10014560	F043945	MKHNLRMAFLSLLLVLTLGVMPVFAESADHAMDWTHGIGSRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLDGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDKGKGEMMEFALEDDENSHLMPDMPGFFRWSAESSKYERTLYDGKVLTMVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARAYLYGGVE
Ga0245207_100198	Ga0245207_1001982	F051934	MGLMRRLAAAALAAVLVLSTALGERVMFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVLASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQATDLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGVRQAIADLAAQETSGRLEKTALITCAEEIARLSEDDRALYYYIEAFGLESGTDADIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEKTVFSYADADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPASYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTVIIRRIQPDHSATMMTLTVKVIQVAEGTVKYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGEY
Ga0245207_100198	Ga0245207_10019854	F082715	MMKFMKRALSLLISAMLLLGCFALAEEAPLLPIAIVSYDLTDEATTAALSALIEPKDNALTRWERVVLSDGREAWVICQFDQATMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGNEVVSTVNLDARDATILLVEPDEEGNG
Ga0245207_100206	Ga0245207_10020668	F077320	MKRKGMRRRRKLVLLAVLLIMVGIAVWRIWQTPRPTVLHRQDAWLSSAEPEMVDTLPDNAFTAELPEEIDGRLLYIRDYSASGHYQIVWEGVSAEAAEVYLNALLDKGFTRLMGTAEDIASGVLLARGDLTLSISLSGGTLNMLMTRAEEPTATPLP
Ga0245207_100209	Ga0245207_10020912	F043413	MTERELREKLQFAYGTMPDATRAAFEHSLTHHRVETRHPARMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDETGSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRKHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFPAAYTEDEICQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGERWDACHPDAEKGFTLELQE
Ga0245207_100209	Ga0245207_10020914	F055739	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRSIGLSRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMTAKTDDVLAVEVRICGECDGQMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQHMITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVQPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0245207_100220	Ga0245207_10022015	F042910	LADRLYCALNGTTLRDLDARIHLLDVEELAPAVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPAMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITALTISAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGRYC
Ga0245207_100220	Ga0245207_10022085	F059982	MRRMTRLLCLMLLFSLITFSCPLAEETDALAGTPAPTPMLTAVPESALAPFNVVLPEDAHVEMTEGRITLVRGDSRVVAMVISRVPDEDPAAALPILMQDFDPKTSETMDFDAQPGFCILGGVVNDAFDDGEDKITLMVLADSGELLILSGYNLARDHHALYLFLTELLENASMDGAAVYVAEDAAATASPKV
Ga0245207_100267	Ga0245207_10026755	F041208	MRKILAMLLSVMLLLTAAVAETSAPYAPETVLPLVANNRPYRDFARGAISSSEVAIEQAKAWLYLPLFVTNFSAKSEAVDWSAMRAEEGWYVTAYMRNTFVWLLMDEQGRVQAYDFDLLGNASLTYDGALPDNLDEAISSYIRRFADLNGFVEVADYAREEVTTFGDYAVAVTVQVTLDGTPYRFTMRLDMMAFTSVENANLHPAAAQTQRDILLLMRDNLAEKGVDITQTFFAVQADDADGETNLTGIASFPADAASDAIREQYGELERYTLHYSGRASEAGIERVELSDWQETTATAQFPLALYALVDGKYLVPDGELAAGTAYLALDSMGLRGRNVIPLESITMLTRIRYARTDGTFAESWVSSDTLTENDAAPAAPKREPIPTLESYQITLNGTAYTAFAINKVEKGYDTFADIAGTQTAVVDVLTSAAQGVIAEYGVDASDLLCRTVVEYGYRADKGCWQVDFTIPQRDMADDAYEVEVDDKDGKVTGLWGPQDGNG
Ga0245207_100267	Ga0245207_10026761	F101193	MAQYNWTRCPHCGKLCKPSRFKAATVLVPIEFVIFVVCIFFRNSMNDAIGWCAAWLLFMLLLFLPQYIYVRFFMPYETLSEDETRKFRDLQEH
Ga0245207_100267	Ga0245207_1002679	F078003	VNEHLAFAQCLQRVLNETELTATEVARRLEMRSRNSIFRILKGKTSPQLNRRFLESFHKHMGEQLTEAQWAALNRALEMDAVGAVEYKSRQALMQLVGAFSEPISPAKVCYLDALGTEKEDSFLHYLQVLFCGALKVNALLFGCCDLGLFRQLQEAIHPVAQRVIVRIDHFIYAGEDEIVSNLVGIQPMVDQPCYHAYLVDAENCPQERLAHYRTGQMTFHVMHQDGSESTVALFLLGKNEFTATVMSTQDLWMSRKVLCDRERFSPIRLLWQLNDENSDFIVYTQQYCKMEHGAAIYYIRPDVPFQYIPLEVLYPVVREGFARMGMTREEYEPNVTALAEIHQARMTNMMRRRRPTYIVLNKAAMEEFVRTGRQSDHLHFLRNFTPKERKQILDVLVQQARENPFFHLYFAQEKLPCTMGEVALYDGRALITMSSGSGYDLRTDHRESCITHPFVLRAYKQFYMNTVVDRLADTQTESLNQLEELVRRCEKMIREGQKGNAGNEQEKISGQ
Ga0245207_100469	Ga0245207_10046934	F058154	MKNRTFQRLFPLLRMGSILLAAVLFCAALIGVNAQLTVGTNEERNLATYLGLALTAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDARKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKAARIES
Ga0245207_100493	Ga0245207_10049326	F073574	MLLPAAVRPYAADVDGTASRVRCAIALNGSKELRIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDGDVPLFDSRCDGYANVLDDRQPPAPIPLHPAICPKCRNAAFQLRLCFEYPDAEEVSAFANPSDAFTWVWVTMRCTRCHAVFRGDLECD
Ga0245207_100493	Ga0245207_10049330	F074898	MRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRMTAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGHSPSEALGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHHLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFRQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLDNENTNVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFQLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPDTLGTIELTQLLDDLF
Ga0245207_100517	Ga0245207_1005179	F095494	VSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEAARTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDALRQHIAAAHQKNERKRQKRKKIMAAAACSAAAIAVAFAVSHPLLWYENWTTSDEQQHFVTSHEIAIEMLETAVADPTLPSGDTVEVQSIAALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKLLLFSGRTSQEEVTSLLRTIIREIGE
Ga0245207_100650	Ga0245207_10065020	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPGQVDEATPFQLRPTELSICSVTRAMGGVVVLANDDNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYAMSRVPNYRMPDLTHAISNLTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMANLSCLNVSYRDLETDKVYTYPASLTRMYVCGSVLAISVMQENAIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSPNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEDPVVTFPAANVDIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPEVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPDTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGIYRDAVTRDGKIYALPIYAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVHDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTMNADLVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVNDYEKTLTELRRQQENAPVWKKQGIQERINEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ
Ga0245207_101288	Ga0245207_1012885	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNENVSETLCIFTIDKTNCCRI