3300029692: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37105

Overview

Basic Information

• IMG/M Taxon OID: 3300029692
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283806 | Ga0245170
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37105
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 162335690
• Sequencing Scaffolds: 18
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	8
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039147	Metagenome	164	N
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047755	Metagenome	149	Y
F051934	Metagenome	143	N
F059106	Metagenome	134	N
F068941	Metagenome	124	N
F074898	Metagenome	119	N
F074899	Metagenome / Metatranscriptome	119	N
F074964	Metagenome	119	N
F075480	Metagenome	119	N
F076189	Metagenome	118	N
F084124	Metagenome	112	Y
F087334	Metagenome	110	N
F090484	Metagenome	108	N
F090514	Metagenome	108	N
F099406	Metagenome	103	N
F101191	Metagenome	102	N
F101355	Metagenome	102	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245170_100021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	267808
Ga0245170_100041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	186672
Ga0245170_100051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	174223
Ga0245170_100089	Not Available	141448
Ga0245170_100114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	127699
Ga0245170_100127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	122014
Ga0245170_100290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	74894
Ga0245170_100542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	44699
Ga0245170_100637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	37626
Ga0245170_101117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	18998
Ga0245170_101623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12405
Ga0245170_102247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	8578
Ga0245170_102636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7233
Ga0245170_108420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2529
Ga0245170_111043	All Organisms → cellular organisms → Bacteria	2017
Ga0245170_116556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1421
Ga0245170_121619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1122
Ga0245170_130295	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	809

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245170_100021	Ga0245170_100021151	F068941	MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMELTTMPSELKEESFVYELYYNDTTLVKKGNFKAYNASSNANGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG
Ga0245170_100041	Ga0245170_100041116	F051934	MGLMRRLAAAALAVVLLLSTALGERVTFRLSADIDPVQYPAQERKLAQGLKSLFRLLTVEGDVVASDGSFDARIDLGLTNAPEKTATRIRFFGLDSHWGIQSTTLGGETLMVNQLAWLEFAIKAYNHLDLPLQRVFLWLSPYAHTSAWAGLRQAIADLAAQENDGRLENTALITCAEEIARLSEEDRALYYYIEAFGLESGADADIFDALATLPEYVEANFPDGLSIEHTENGVSWQNGEETVFSYAEADGTQVVSLHLPDLVDFSATLRRDALLFTGALSLQSDVLNADVSFSLPVSYPVTLPFYAQIDADGMMTGDDGIHLAFEGEAQGDTITIRRIQPDHSATMMTLTVKVIQVAEGTVRYAPEDVQGTNVLSVDGPALAELMGRIGKPMVRKVTQWLAALPAELVQGAMDAMEDSGLLGTLTDAILNGEAGEY
Ga0245170_100051	Ga0245170_100051136	F039147	MRARRLLILLMMLLLLPQAQAERLTLYTRPNNVDEAMPFQLRPTELSICSVTRAMGGVVVLANDNNYDSLSLYFWQDGMTEMRKLGGGFYWVMSSDTMETAQESCEYSMSRVPNYRMPDLTHAISELTSDGETLYALNRINGLIFKISETKDGLQTEDVCTMENLSCLNISYRDLETDKVYTYPASLTRMHVCGSVLAISVMQENGIKVVLVDLTDGAIREIADESLEAMYEWADGELLLWRLEGSTNEISRSSGTYTLSRYSVATGEETLLSTGVPYKKRSECGAYDPYSGSYYDVRTRQIVRTTDFVQEEPVVTFPAANVNIAVTKDSIVGVNLSSVYVRSKENGDMTVLRIQSSNGASNTALQHFAEENPKVILAQETLAKSAMNAASLAARMSASADAPDILRLGLTPNTPEADGSWPLDVLMDKGWCMDLSVYPEVSDYVSRLNGVYRDAVTRDGKIYALPINAWSYGYFISRNVMEKLGLQESDIPTNLIDLCAFITKWNDNLTGAYAAYTPLEETESYRERVFDLMVHDWIGYCQAENIPLRFDHPVFREMMAALDAMRTDKIEQANQQVNEEISDYRECLIWTDAQAVGNFANYADAFGSRIFLPMALTPDVTTHYGIGYMTVLVVNPRTTNAELVGKMLAQVIADQEATAKCVLLADYDEPIEDSYYLIMVRDYEKTLTELRRQQENAHVWKKQGIQERIDEEEASLQRYTVRERWTIAPKTIELYQQTILPMSYLRRPGILADSDAFSALVSQVHQGEISLEEFVEKADKLIEGLEQ
Ga0245170_100089	Ga0245170_100089118	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFIKFSLYSKVYKDSKVDKEKGIEAKTADWCADNVVYDEEYKPFGFATAETLETKSSAKWIVKETDEYKSTYVAVKIKSYSLRTVAKCVSEYLAHESNQQ
Ga0245170_100089	Ga0245170_100089144	F090484	MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEETRSLASSMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSAWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIGNMDISIQSLPNISITVDNDKELDGESIFKDIPFEELSFYSDTYLYPSSQYSSL
Ga0245170_100089	Ga0245170_100089163	F099406	MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEDGGTKVLESLGMVSTGVDSGYLDLSIFSGNSGSLDENSFAKVLDAYNNNITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNLVTLSNTILSYLNFMARPPRVVTTLANLPKGAHNIIANVASATNLSMTVSSEYIGREWQVRVNNTTGTDITQPLPTSGRYQSMSGDSVVIPKNSFIELSIWYINDKLVIRVGEQA
Ga0245170_100114	Ga0245170_1001144	F101191	LLISHHPASAECLQLGEGMLLCGFDLDKALSSRDPLDCMAEADADDTKRIGTTCGGGIFRAVPREFDPESGSHRLPFAGSIRLIDWRVTLSGTMLDVTPENLARLLPSDTEMTERVTTLTPKQARKPLSRLCWIGTTSRGLLVIELRNPLCVSGASLTSVPDGAGRLPFTFLAQSDRPGDVNLPARLYWWKEETHDAA
Ga0245170_100127	Ga0245170_10012762	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGANWFVILLTIVPAGSRTRAGSSLPLSPASNIFLKQTPRRGLPLAWNAGADSFLFCG
Ga0245170_100290	Ga0245170_10029012	F084124	LFGGLNITALAFARATKENTLPFHGQRNALTVFLAFPVTMAIACFNKLSFSAQTTTLFAPXXXNCYIG
Ga0245170_100542	Ga0245170_10054216	F075480	MNKTKQEKWQRAYGDTPDSFRQRVAASLPKGEESRHVAFPRRAMVLAAALVLVLTTAYAAVVTHTELVWNAGHPIENEADDRLGLLTGKAGTSGDSLTIGGVTFTVQDGVYSPENGQLFASAVISADESVQLVAVEADMEHEVRLTTPVDAKLDPSGISWAEWAEQNGKTLVPIGMEATPTLQFLKVNGQTTDTPLIGAFLTQNPDGTVSLGIQVDLTEADTSHLKSCEVQLECRVGAFGKDGKATQWQKEILTATITFK
Ga0245170_100637	Ga0245170_10063716	F047755	MENEKVKYLIDMINDMDIKDKLRLAICMSKSEWSGLIYNTKENYEKFDNMLKSIDEEYRNTLINFGQGKYFNINFAMAKLMEMETTEQNKVALYLFNTLNMKKVENYVNM
Ga0245170_101117	Ga0245170_1011171	F074898	MRKILSLLLILALFLPCALAETPQGIDLALTSTYGDGLSLRMTAGLGETPFCSLTLPSGQIDLAFSPDKGLCVQSGGQWAQLLVEGHPVDAALLTTPLKLLDGRSPSEALGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHHLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPESPVIPEAIGTIELTQLLDGLF
Ga0245170_101623	Ga0245170_1016239	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYCAAALFEYREKYQ
Ga0245170_102247	Ga0245170_1022473	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0245170_102636	Ga0245170_1026362	F042936	VWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRCKG
Ga0245170_108420	Ga0245170_1084203	F076189	MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL
Ga0245170_111043	Ga0245170_1110432	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQSPQPKGAGAVFPYVLPRCSYFFKSFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLSYVLFFFFKIYLKKIDFFQNIA
Ga0245170_116556	Ga0245170_1165562	F074899	MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTVVGKDEVGSSNLPSSSKMC
Ga0245170_121619	Ga0245170_1216191	F059106	HAIVWKIRVILLQTFVWIVDLKVRERLIEYLKKDIKYHRVIIGGLV
Ga0245170_130295	Ga0245170_1302951	F105374	MKKRVTLLVALCIWKVVAAQTPYGEMPERFRPDTLPCRLGGGVCFGMDGLDAAIPRGGGASSCRDPRVVFVAGDTLITFISVAGVADTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVVRSLVGGKEDPLLGSDMRRRYVRLLTEVSV