3300029691: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_40m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029691
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0306341 | Ga0265598
• Sample Name: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_40m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118970442
• Sequencing Scaffolds: 21
• Novel Protein Genes: 22
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Alt. (m): N/A
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F001024	Metagenome / Metatranscriptome	803	Y
F001633	Metagenome / Metatranscriptome	660	Y
F004323	Metagenome / Metatranscriptome	443	Y
F004925	Metagenome / Metatranscriptome	418	Y
F009862	Metagenome / Metatranscriptome	312	Y
F013484	Metagenome / Metatranscriptome	271	Y
F018558	Metagenome / Metatranscriptome	234	Y
F018909	Metagenome / Metatranscriptome	232	Y
F033437	Metagenome / Metatranscriptome	177	Y
F033485	Metagenome / Metatranscriptome	177	Y
F038463	Metagenome / Metatranscriptome	166	Y
F039953	Metagenome / Metatranscriptome	162	Y
F056992	Metagenome / Metatranscriptome	137	Y
F079305	Metagenome / Metatranscriptome	116	Y
F093163	Metagenome / Metatranscriptome	106	Y
F094064	Metagenome / Metatranscriptome	106	N
F105212	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0265598_1009306	Not Available	1717
Ga0265598_1011405	Not Available	1535
Ga0265598_1016363	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1251
Ga0265598_1019571	Not Available	1125
Ga0265598_1028501	Not Available	893
Ga0265598_1028989	Not Available	884
Ga0265598_1030935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	849
Ga0265598_1031140	Not Available	846
Ga0265598_1031775	Not Available	835
Ga0265598_1033587	Not Available	808
Ga0265598_1033671	Not Available	807
Ga0265598_1034227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	799
Ga0265598_1036362	Not Available	770
Ga0265598_1039370	Not Available	733
Ga0265598_1042621	Not Available	699
Ga0265598_1042975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	695
Ga0265598_1044097	Not Available	684
Ga0265598_1044989	Not Available	675
Ga0265598_1050472	Not Available	629
Ga0265598_1055893	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	592
Ga0265598_1073719	Not Available	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265598_1009306	Ga0265598_10093061	F013484	VVQAILEAVIAQRTLPDDAALAEVVNRHLAEKQDPLAGQVTASMVETIRLGWGIKRLPVRQQLQEARTPPTPKQETVRLGRTRAGGAFILAVLLVEAGWLKLAHLLPVVSHYAVTAVQWLLTAIFAVIYDVQRAFHLDDVRDVGFALITGRPRPLSHGTFQHLLHHFPAEDAQHFYAASSRHEVETLGDGPRRVSVDGHNLPRYTRIVAVTKGKIGNTGRVLKAEELVLAFDLDAKRWLALRVYQGSKKLRLALPEIVAELRRHRDEGKGPWRLFFDKGDYKGQIFRDLAAMEEVHFYCPAVRYPDNVAQWERLTEEDFDPEPFVFAKHADLSPEERPVYRLADTEMTINVWENGQVVGTVTLRAVVIHAPQGQKPAERWPVVYLTDDGQIDARALANEFGDHWGQEFAHRVGKHDLCLDILPPGYTLTSQRDEEGQLQRQVEYDTTAFFLSAWLRCLVFNLMSLFAQELEGEYAKMWAGTLLRKFIRRPATLYLVGNELHVVFDPFPDQEALRPLLDRLNAKRVALSWLNGLVVQFSIARDEPLHPLTKPEKRQRLFGDD
Ga0265598_1011405	Ga0265598_10114052	F093163	MAERQDPIELAYTLLNEPIDPNLRCPLELQEIVNYVEAPMGETIHYFASPAQDRGVDVIYAANADGDLAPVKVPLRGVSALTFEDLQSKLDYVLIHELLNSKDSSALAARKNGIIRSMDNEEVRRALNLCFVASQEVNKVTGEDLLDVIIKMKQKVSDYATDYILLVASDVMDEIEKYDKDNVATFNYKMNILEEIAKLGIKKIVKIIGNSGLAGASTPTLAAGKAILVGRDSSLTAGKPISVVRAKFEKEVAENSGAAEGAVRLIQVVKTPTVINANGKNTIGYGVFGYEGIIEVNLNFRAISWSDD
Ga0265598_1016363	Ga0265598_10163632	F018558	MKKEYEAPKVITYIEDEIIELLGPAQTCSPSPCPTYQ
Ga0265598_1019571	Ga0265598_10195712	F079305	AGVAMAAGFFVQGNMSEAWDKGSLRVRTGPEMAKLWFGLPAHSGITVLAKPDTGAAVTTTLNMSATIDLRVPAEYAITVTRDSGDGQWTCRDAAGNPVLLGFGSSVDETHHVRLTYVADEDEETWKFTWPKEATFLVQLFGKAGKVVEEQDLSDSDEFELAGGGSFTLEVVPTEGSGEFSAKKSE
Ga0265598_1028501	Ga0265598_10285011	F018909	MKFVRIAIGAVIAISVVGTIVTAVVALTGTGMALEGTVSGTLLDLAPVVFVAGILAYLFSLSGG
Ga0265598_1028989	Ga0265598_10289891	F105212	KGSPKNGGSGQKFLIELEAKSHGSQDPHHRWVGVWDYEEQSEEARITKKC
Ga0265598_1030935	Ga0265598_10309351	F000344	MRPRHPHAAESGVGKHTARESESAKACAAGKERVANAHSHKLASEAL
Ga0265598_1030935	Ga0265598_10309352	F004323	MPRNGLRRLEGRATPAVAIHSPVTRDYPSRALSDVFQAAALRLFYQG
Ga0265598_1031140	Ga0265598_10311401	F038463	MSYPTLPKRVFNSPLLKYANFEDGSHVNLIRLIKPYANGIKYAVHETTKSPFCSNGMFKDLDKAEEKFQLMVRSAMSESNLRDMGETNN
Ga0265598_1031775	Ga0265598_10317752	F000344	MRPTSAHAALSGVGEHTARESESAKCCADGKERVANAHPHLTAKR
Ga0265598_1033587	Ga0265598_10335871	F000344	MRPKHPHAAESGVGKHTARESESAKRCAAGKERVANA
Ga0265598_1033671	Ga0265598_10336711	F105212	KGSPKNGGRGRKFLIELEAKSNGSQDLRHRWVGVQAGKEQSDAGRTTARCQVFF
Ga0265598_1034227	Ga0265598_10342271	F000344	MRPIHPHAAESGVGKHTARESESVQACATGKERVTN
Ga0265598_1036362	Ga0265598_10363621	F001024	MRPETPLAVENSVGKPAATERLMSAWERERGELPPPNLSPSGR
Ga0265598_1039370	Ga0265598_10393702	F033437	DATLRGTRMFQSHGGTVLTVAGRDLLSEASAPGSDAPCRERRAGRGVDTPAISSSRVVTFTTRTAPAFGRPLASRYGSDLLPLRLHSLLQ
Ga0265598_1042621	Ga0265598_10426211	F004925	VIARLRPIVSRIIPGDWGKAVPGWWARPLESRIARFGGGGRIHQFLWRRSCAVSNAK
Ga0265598_1042975	Ga0265598_10429751	F001633	PDATLRGTQMFQSHGGTVLTVAGRDLLSEASAPGSDAPCRERRAGRGADTPAILMLSRRHRYRGDGTSFWLAVGPTLRV
Ga0265598_1044097	Ga0265598_10440974	F033485	MHIIIRGKHDHFGKTRSEQETNMRKEWGTTMTDEQLDKLKFVEKKVKDKTGSKKNFITGIDIDKV
Ga0265598_1044989	Ga0265598_10449892	F039953	MLANPLELRGRHRVNNKNPEAALEADGWGNSMAEAYTGNSIGHREGRILLKVDIAP
Ga0265598_1050472	Ga0265598_10504721	F009862	DEKPLTIRCPNCKQMHEPDFNETTRRYVCPLCAAPVDAQVIIEKKKRGMK
Ga0265598_1055893	Ga0265598_10558932	F056992	LSKFVDTDRAEVVDARATGGEVIKIPMRERIFPIQALPAVADNLAWFLEQVTGRGYQKAEEAYDGGFTVREPGHQAYGLKVNAEANIVIIARVALLEDDTIFQRYVNYLRTGVYL
Ga0265598_1073719	Ga0265598_10737191	F094064	MPRVMKDYSGPVCPYVHLENFSKKVVRDLAVQYARAYSQIDGHWYDAVAKRYGEKIARDIDLEVWLRNIPPTALRTLEALGVKERDMAAILKVTQFHPAAGGGEYLWDYEVELKSPTVGIVKVLKCKPYEYYRDKGDEGFVRVMCRDWDIPMFGITG