3300029690: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37352

Overview

Basic Information

• IMG/M Taxon OID: 3300029690
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283846 | Ga0245210
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37352
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 180651171
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	2
All Organisms → cellular organisms → Bacteria	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047126	Metagenome	150	N
F052660	Metagenome	142	N
F055715	Metagenome	138	N
F068855	Metagenome	124	N
F078822	Metagenome	116	N
F087335	Metagenome	110	N
F088914	Metagenome	109	N
F088920	Metagenome	109	Y
F088921	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245210_100356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	69677
Ga0245210_101062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	26446
Ga0245210_102134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	12852
Ga0245210_102572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	10594
Ga0245210_105691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	4510
Ga0245210_106675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3832
Ga0245210_107215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	3513
Ga0245210_110100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	2440
Ga0245210_114842	All Organisms → cellular organisms → Bacteria	1570
Ga0245210_115511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1487
Ga0245210_133086	Not Available	616

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245210_100356	Ga0245210_10035664	F068855	VPTVEAQGPQVRKILAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW
Ga0245210_101062	Ga0245210_1010621	F055715	LTKANEFDRINELLIERTAKKFERVSKNKLKKFLTNEKLCDKINELIRVGTAEILDN
Ga0245210_102134	Ga0245210_10213418	F087335	MIELYFNDANLMPENREEEQYAEAALNSILAGKTADVEMCIQPCFYDAPLHKGLLYNLDDGTTLRIRPILNEVGEPELLIRCVTEESVETVYQGGANYD
Ga0245210_102572	Ga0245210_1025721	F052660	PENAPEKIGQERAGTEWTVVKSKIRLCIRNRSYGRFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNS
Ga0245210_105691	Ga0245210_1056916	F088920	VSANLHHYPAFGAGLILHLILHFSQKAAIFAPKQAILLLFVPTLFFAGLSVFSPQTSPKISGQTSLYQPWLSPYYLFKD
Ga0245210_106675	Ga0245210_1066754	F078822	LSSTFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0245210_107215	Ga0245210_1072153	F087335	MIELCLNDAKFLPENREEEQYAEAALNNILAGKTADTEMCIMPCFYDAPLHKGLLYHLNDGTMLRIRPILNEAGEPELLIRCVTEETVEEMYQRVSNYD
Ga0245210_110100	Ga0245210_1101006	F047126	LFPKVYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAANQSKSAYILSSLESPCILCSLLRCFHILSKKLQKTC
Ga0245210_114842	Ga0245210_1148422	F088920	VSARPHYYPAFGIGVILHLILHFSPKAAIFAPKRAILLIFVPTLFFAGLSVLFPHTSPKISGQTSLYQPWLSPYCLFKDQLEMR
Ga0245210_115511	Ga0245210_1155113	F088921	LGATVRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVANKSAMIRDKMRSE
Ga0245210_133086	Ga0245210_1330862	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKA