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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029689 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0297565 | Ga0257138 |
| Sample Name | Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_55m (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 113995702 |
| Sequencing Scaffolds | 9 |
| Novel Protein Genes | 9 |
| Associated Families | 9 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → lake → saline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 49.68 | Long. (o) | -124.009 | Alt. (m) | N/A | Depth (m) | 55 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F035608 | Metagenome / Metatranscriptome | 171 | Y |
| F038920 | Metagenome / Metatranscriptome | 165 | Y |
| F046170 | Metagenome / Metatranscriptome | 151 | Y |
| F052683 | Metagenome / Metatranscriptome | 142 | Y |
| F060598 | Metagenome / Metatranscriptome | 132 | Y |
| F071959 | Metagenome / Metatranscriptome | 121 | Y |
| F073054 | Metagenome / Metatranscriptome | 120 | Y |
| F083668 | Metagenome / Metatranscriptome | 112 | Y |
| F088317 | Metagenome / Metatranscriptome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0257138_1000473 | Not Available | 5829 | Open in IMG/M |
| Ga0257138_1004892 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium | 2313 | Open in IMG/M |
| Ga0257138_1028948 | Not Available | 879 | Open in IMG/M |
| Ga0257138_1031509 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 834 | Open in IMG/M |
| Ga0257138_1032435 | Not Available | 818 | Open in IMG/M |
| Ga0257138_1034041 | Not Available | 794 | Open in IMG/M |
| Ga0257138_1039440 | Not Available | 726 | Open in IMG/M |
| Ga0257138_1049858 | Not Available | 629 | Open in IMG/M |
| Ga0257138_1050928 | Not Available | 621 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0257138_1000473 | Ga0257138_10004731 | F060598 | QETVRLGRTRAGGAFILAVLLVEAGWLKLAHLLPVVSHYAVTAVQWLLTAIFAVIYDVQRAFHLDDVRDVGFALITGRPRPLSHGTFQHLLHHFPAEDAQHFYAASSRHEVETLGDGPRRVSVDGHNLPRYTRIVAVTKGKIGNTGRVLKAEELVLAFDLDAKRWLALRVYQGSKKLRLALPEIVAELRRHRDEGKGPWRLFFDKGDYKGQIFRDLAAMEEVHFYCPAVRYPDNVAQWERLTEEDFDPEPFVFAKHADLSPEERPVYRLADTEMTINVWENGQVVGTVTLRAVVIHAPQGQKPAERWPVVYLTDDGQIDARALANEFGDHWGQEFAHRVGKHDLCLDILPPGYTLTSQRDEEGQLQRQVEYDTTAFFLSAWLRCLVFNLMSLFAQELEGEYAKMWAGTLLRKFIRRPATLYLVGNELHVVFDPFPDQEALRPLLDRLNAKRVALSWLNGLVVQFSIARDEPLHPLTKPEKRQRLFGDD |
| Ga0257138_1004892 | Ga0257138_10048926 | F073054 | MKVAFEAQIMQNNIKSLRSMDKEARLTLEYRAEDNELVANINKLHSAEKTIFVVIMDKKETSKTDKK |
| Ga0257138_1028948 | Ga0257138_10289481 | F052683 | VKDPENTFLKRKESWVRLLVFLLVLIISILSGLTFLFVGQLKSQVSETATGGENSTAYQAVNDTEAAGATVVGYLPLIFLAIIFGAILTLVLKIILPYINLGQQMGGGF |
| Ga0257138_1031509 | Ga0257138_10315092 | F088317 | MPGPEDKFSYPPRPTLTQDDVNKTRPTTRRDAYEGVKTPALPPMDKSQILRAIESGFKEAENPARYVMRPPADLPYRVLPLNTKFYSCNTRHLKEIGAFRTLAPELFGDAGYKLVDDAYASFAYGEFATARARGQFKNAPNCTAREIGTFIATVYDIQNFPIVIAEASDERVRIQLYKGLPIHCPYDVRRGDYRLCAATAGYERELTKLCNPKLRAYLSRTKAIGDDCCELTIEPDPNA |
| Ga0257138_1032435 | Ga0257138_10324353 | F083668 | CERSTTMKWTPDKITAMVLVIGCLALIFTGIDGEVKSILTLSAGWLFGGAYIAAKTK |
| Ga0257138_1034041 | Ga0257138_10340412 | F071959 | MASRNYLVMSNDMTFTDKKEYRTKALAAGLERCGLKSIGDINSDVPGLQAIPIGNKSARVAAIKSFIETGVWPKTIDQRELAPLTDFVAAAAQDFWQTIALGAIGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVGGNIQAQ |
| Ga0257138_1039440 | Ga0257138_10394401 | F046170 | LAQPQKSNAEVSQEEGNMIRIQDFGEVAYGGAVTLTSWWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWTEKVSTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQSTQRSYQPEFNKTMAW |
| Ga0257138_1049858 | Ga0257138_10498581 | F038920 | LLTEIVTDEQLIKLYTTPGYLVAVDYPKKEVTLHTVDCMLADPISSVGVKPSKARENKTGEFWFSESRDEANSKAEEIAKNKGYTYTICPICNR |
| Ga0257138_1050928 | Ga0257138_10509282 | F035608 | GSLTPLLATVTSIYCPRLPENAALPAVSFFTRGGVNNPYIPGMLEPSVQFDCWAGTPIAARKIYRALYDNLQGIQGKVVTVGPPSEIIWSAIEEVQGQDLVDVEIPNYFRTLVFFRFVIKAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |