3300029688: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35562

Overview

Basic Information

• IMG/M Taxon OID: 3300029688
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283859 | Ga0245223
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35562
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 161435363
• Sequencing Scaffolds: 20
• Novel Protein Genes: 26
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F042095	Metagenome	159	N
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F071325	Metagenome	122	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F081354	Metagenome	114	Y
F083452	Metagenome	113	N
F084124	Metagenome	112	Y
F089005	Metagenome	109	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F090513	Metagenome	108	N
F098313	Metagenome	104	N
F101355	Metagenome	102	N
F102167	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245223_100410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	51779
Ga0245223_100761	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	23867
Ga0245223_101132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	15354
Ga0245223_101364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	12821
Ga0245223_101436	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	12243
Ga0245223_101482	Not Available	11857
Ga0245223_101743	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	9998
Ga0245223_101856	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	9387
Ga0245223_103410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	5399
Ga0245223_104291	All Organisms → Viruses → Predicted Viral	4471
Ga0245223_104720	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	4087
Ga0245223_106581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3089
Ga0245223_107045	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2913
Ga0245223_108095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2583
Ga0245223_109763	Not Available	2206
Ga0245223_109971	All Organisms → Viruses → Predicted Viral	2168
Ga0245223_115230	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1490
Ga0245223_120608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1133
Ga0245223_130530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	783
Ga0245223_141912	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	581

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245223_100410	Ga0245223_1004101	F089005	SKQCSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKKHQELRI
Ga0245223_100761	Ga0245223_10076125	F058555	MSGTKITLLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSSKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIIKYKHKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
Ga0245223_100761	Ga0245223_1007615	F083452	MSGRVKIKSKDKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLLDKYVRK
Ga0245223_100761	Ga0245223_1007619	F102167	MDINQIKTYLPSGWDVVDLIDHGIIDLDIMNGKMIGEYVAVLMIKSYDRITESHNLTSFSFHDKDMGGLRRLVSNAIMAVGLRNNTLKGDGNTAIK
Ga0245223_101132	Ga0245223_10113215	F071325	LALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0245223_101364	Ga0245223_1013644	F042936	MERGGGKGRVWKTKEGIMKTSGIVNRGEDTIRNFEKVEQKGALTPPYLGKVYFRSRLRGK
Ga0245223_101436	Ga0245223_1014363	F098313	MREQKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHNGEWGNKEDMDKEASFVNLVKDRDDDDKFAILWNFSSDDDIMMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGDCVSEFINSKNTD
Ga0245223_101482	Ga0245223_1014825	F050794	MAPVGTLYIMQLDSFLHRKIIQDLRIQRVKVLMMLYTSHYFVNNRQRQLLDHTYALSRSQAFDYMTEFNKRLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAEKLELDTDAIKNMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMKIKKLTLSDIKKVVMMMEDRYSYISSI
Ga0245223_101743	Ga0245223_1017439	F076653	MTIRDKYFGWKDIFFDRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSALQTLIRLTENAKHMFEDQPGVYDMIPYRGFFLRDDFLSGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDINSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFMGKRYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYNKGFKKRLAKRFNESLRGGGDLFGANLACMVCDHKDIDWEALRLWLDKYDEPTDKGMVNSPIQFMYLYLYYYFNKMEIWGHKRTLYINYRWSKNR
Ga0245223_101856	Ga0245223_1018561	F042095	SNKFVWFTTWDRALRNYYSDDYNYVPDPVVDNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRNDYRIIFRSLAIQYRKNPNTTWWFRKEDGSQYIPVDNHLYADGRRDVRRAVAIDFTCDIYYAEIKTCKMTAFPIVDTPGLESLIVHGTTYANDGIPVDKLSRSKKLTYISFENVGTRMTVMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQELRLSSCYLDRYIKEFNDLPKLTLLSITPGPSDMWNYSDINTLPFFEVDKINPSINTFTFLDDWMNGERRTNWNDDNMSDRGLDHLTGFSVSHSNSIRMDKLPDYIYEMRSITWFGVNCSTHSQKRSDDFVDSFYRLVTEWDQITMTSVAKDGKRNQFYGLTVSMYSSTFPNENQRHSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQKWTIKPV
Ga0245223_101856	Ga0245223_10185611	F106193	VGCNTCKEKALKAERERIERSMMNHSSSTVVSDMEYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGYTKYIKP
Ga0245223_101856	Ga0245223_1018563	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDTFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS
Ga0245223_101856	Ga0245223_1018564	F075481	MMRLRISLKAVFCLGLSLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLNADIVITEREFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGVKDIDKKTDIKHKDVDDKKESRWPIAITSISVLLILLVLIYLLKKMKVL
Ga0245223_103410	Ga0245223_1034107	F101355	MAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFFFFKIYLKKIDFFQNIA
Ga0245223_104291	Ga0245223_1042912	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEVTDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFNLNENELYRYRMDKDNVASFK
Ga0245223_104291	Ga0245223_1042913	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKTKKVKDIKKKDDVEEGDKIKEE
Ga0245223_104720	Ga0245223_1047205	F078005	MEKSEFVKKLEKIIDMVKTEDDGFEYGGEVIFYKGDDSNYEVSVTNIDMNLEVEASAIAGMDDMVFTCLMSEVYKQKVAKAIMMEKDDDEDN
Ga0245223_106581	Ga0245223_1065812	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLFFSFSFRTNFAQALFSSLLFVSDTHAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0245223_107045	Ga0245223_1070452	F057001	VLDAYTSPRARANLMTSKDLNKVQSEVKKASEKTLAGAVKAWCQLFKSGKEVNEILKDNDIKVDKDIVPALVSLAKDKEVVIQLCKEILPRIDGTFCAYKEIEREYFDKLEQDKNIKTSVDKIGNIAILGTNHKRFGYNEPVEYDGGIYYDVFNGQDKRIVKCAVPVKRYTFNLIAKCVTYYLTHPKNER
Ga0245223_108095	Ga0245223_1080953	F084124	LNATAKAFARATKENTLHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYLKILWALPKPAIFKKIE
Ga0245223_109763	Ga0245223_1097632	F090513	MEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFT
Ga0245223_109971	Ga0245223_1099712	F064725	MIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI
Ga0245223_115230	Ga0245223_1152301	F080673	MDEIIKLQDEILSYLRNNITKGEAYYILTTDKDMIEVLISDKKDGSKRIKILDMEYTIEKDDMLLLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILYNINREKVMKYPYIAIQLDNIQTIEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV
Ga0245223_120608	Ga0245223_1206083	F026592	CCLRTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE
Ga0245223_130530	Ga0245223_1305301	F081354	XXXDFSPIFLKTSRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPLR
Ga0245223_141912	Ga0245223_1419122	F078006	RTCADMIRGQFPAPWHNLNVSSMEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPSIGYLSHGEYGMSVAYSRAYIPSRGSGSGCCVKEEATFDLETALDVLNGPLPRWCKAYGVYPKQYDNIDKWYNSDNHNKKLFKEI