3300029683: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_120m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029683
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0306344 | Ga0265601
• Sample Name: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_120m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 69443466
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Alt. (m): N/A
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028081	Metagenome / Metatranscriptome	192	Y
F046170	Metagenome / Metatranscriptome	151	Y
F060598	Metagenome / Metatranscriptome	132	Y
F064398	Metagenome / Metatranscriptome	128	Y
F088317	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0265601_1004393	Not Available	1842
Ga0265601_1013319	Not Available	1008
Ga0265601_1013758	Not Available	988
Ga0265601_1016270	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	896
Ga0265601_1020696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	775
Ga0265601_1032186	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	596

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265601_1004393	Ga0265601_10043931	F046170	MIRIQDFGEVAYGGAVTLTSWWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWTEKISTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQSTQRSYQPEFNKTMAW
Ga0265601_1013319	Ga0265601_10133192	F046170	MIRIEDFGEIGYGGVVTLTEWWDNKRIDQGKIGTKDVFKKASFYTYLGVGLAAALVGGFVWMRRYERWSEHVSHGFLYDLPRFAYNLTKALGTTSKRGSESSAVQEAQRILNERMRAKALTQGSGIPAERSYQQEFETVAPHAF
Ga0265601_1013758	Ga0265601_10137581	F060598	HGTFQHLLHHFPAEDAQHFYAASSRHEVETLGDGPRRVSVDGHNLPRYTRIVAVTKGKIGNTGRVLKAEELVLAFDLDAKRWLALRVYQGSKKLRLALPEIVAELRRHRDEGKGPWRLFFDKGDYKGQIFRDLAAMEEVHFYCPAVRYPDNVAQWERLTEEDFDPEPFVFAKHADLSPEERPVYRLADTEMTINVWENGQVVGTVTLRAVVIHAPQGQKPAERWPVVYLTDDGQIDARALANEFGDHWGQEFAHRVGKHDLCLDILPPGYTLTSQRDEEGQLQRQVEYDTTAFFLSAWLRCLVFNLMSLFAQELEGEYAKMWAGTLLRK
Ga0265601_1016270	Ga0265601_10162702	F028081	EALQRLQKTRRENEEAYLKAKAFMDGFRARGQLSQKDSEFLFLLEFVIKGFKNHGNDIITAFENQVRYTEALNTLHIKVNDLEKEIRQLRITLDKMYQDR
Ga0265601_1020696	Ga0265601_10206961	F088317	MPGPEDNVKYPPPPNIPQEELNKTAPKTRTDCYKGIEAPPIPPLEKSQILRVIESGFKEKESIGRYVMTPPPELPYRILSLRTKFVSCNTRHLKEIGAFRTLLPELFGEPGYKAVDDAYASFAYSEFAAAQARGQLKNAPNCTAREIGTYIATAYDIQNFPVTVAEATDDKVRIQLYKGLPIYCPYDVRRGDYRLCAATAAYERELTKLCNPKYRAYLSRTKAIGDDCCELTIELDPDY
Ga0265601_1032186	Ga0265601_10321861	F064398	TVTLKKLCVMALCTFLLTLAFSGVGNAAPEETPSVYYLEYGGLKIDIRAPDQDYPDENITVTVKTEAVVPQIYVKYINVDLYGVVNATTEVILDQISHLKNSSLSSHEVQYNITIPDNLSPGLTYGIISYEWEFMGSPQKIPPSGFALTYIKNVELEQLQAEYDELNATYQTLFQDYTGLESGLKEEMDSTRNLMYVF