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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029677 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321346 | Ga0307359 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Leu2 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 71501824 |
| Sequencing Scaffolds | 26 |
| Novel Protein Genes | 30 |
| Associated Families | 28 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp. | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin035 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| Not Available | 13 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → Viruses → environmental samples → uncultured virus | 1 |
| All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013091 | Metagenome / Metatranscriptome | 274 | Y |
| F015885 | Metagenome / Metatranscriptome | 251 | Y |
| F017318 | Metagenome / Metatranscriptome | 241 | Y |
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F021795 | Metagenome / Metatranscriptome | 217 | Y |
| F022205 | Metatranscriptome | 215 | Y |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F029768 | Metagenome / Metatranscriptome | 187 | N |
| F031881 | Metagenome / Metatranscriptome | 181 | Y |
| F035785 | Metagenome / Metatranscriptome | 171 | Y |
| F047076 | Metagenome / Metatranscriptome | 150 | N |
| F051952 | Metatranscriptome | 143 | N |
| F052619 | Metagenome / Metatranscriptome | 142 | Y |
| F056642 | Metagenome / Metatranscriptome | 137 | Y |
| F059998 | Metagenome / Metatranscriptome | 133 | Y |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F068879 | Metagenome / Metatranscriptome | 124 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F077341 | Metagenome / Metatranscriptome | 117 | N |
| F077368 | Metagenome / Metatranscriptome | 117 | N |
| F078674 | Metagenome / Metatranscriptome | 116 | Y |
| F078767 | Metagenome / Metatranscriptome | 116 | N |
| F079671 | Metagenome / Metatranscriptome | 115 | Y |
| F080087 | Metagenome / Metatranscriptome | 115 | N |
| F092121 | Metagenome / Metatranscriptome | 107 | N |
| F097599 | Metagenome / Metatranscriptome | 104 | N |
| F101222 | Metagenome / Metatranscriptome | 102 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307359_1000196 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003 | 6906 | Open in IMG/M |
| Ga0307359_1000650 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales | 4500 | Open in IMG/M |
| Ga0307359_1005671 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016 | 1703 | Open in IMG/M |
| Ga0307359_1005877 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → unclassified Leucobacter → Leucobacter sp. | 1670 | Open in IMG/M |
| Ga0307359_1005999 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin035 | 1653 | Open in IMG/M |
| Ga0307359_1008367 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1388 | Open in IMG/M |
| Ga0307359_1012028 | Not Available | 1140 | Open in IMG/M |
| Ga0307359_1013960 | All Organisms → Viruses → Predicted Viral | 1047 | Open in IMG/M |
| Ga0307359_1018077 | Not Available | 900 | Open in IMG/M |
| Ga0307359_1018330 | All Organisms → Viruses → environmental samples → uncultured virus | 892 | Open in IMG/M |
| Ga0307359_1019000 | Not Available | 873 | Open in IMG/M |
| Ga0307359_1019569 | Not Available | 858 | Open in IMG/M |
| Ga0307359_1020406 | Not Available | 835 | Open in IMG/M |
| Ga0307359_1022101 | All Organisms → cellular organisms → Bacteria → Thermotogae → unclassified Thermotogae → Thermotogota bacterium ADurb.Bin062 | 795 | Open in IMG/M |
| Ga0307359_1022219 | Not Available | 792 | Open in IMG/M |
| Ga0307359_1022255 | Not Available | 792 | Open in IMG/M |
| Ga0307359_1024017 | Not Available | 757 | Open in IMG/M |
| Ga0307359_1029801 | Not Available | 662 | Open in IMG/M |
| Ga0307359_1032220 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 630 | Open in IMG/M |
| Ga0307359_1035077 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → unclassified Veillonellaceae → Veillonellaceae bacterium | 597 | Open in IMG/M |
| Ga0307359_1035881 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium | 588 | Open in IMG/M |
| Ga0307359_1036664 | Not Available | 581 | Open in IMG/M |
| Ga0307359_1038529 | Not Available | 563 | Open in IMG/M |
| Ga0307359_1043287 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC | 524 | Open in IMG/M |
| Ga0307359_1046111 | Not Available | 504 | Open in IMG/M |
| Ga0307359_1046644 | Not Available | 500 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307359_1000196 | Ga0307359_10001968 | F047076 | MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLQTQILKPKIVNQYEDPNNFRKLDIVKIDSVKDTSRDDVYWEVRHGKLLIYDSNKELITNETIGNHNLEIEYWVRISKAIKLSFPTDDDIESNPNIIEEWNEMILGVEDTEVQLCALYLMITELAGIFPLEP |
| Ga0307359_1000650 | Ga0307359_10006504 | F021795 | MKKEADRVRRWREKQKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAAIMEKALSSLKRQAYAPPVLRHFPRREEALARAAAAPPAGRVGHDGNRQPRILIDDLANYPSLEDIEREQAAKEQSGICNPRSGEGFITRLLRSSTGPFSRKKKWLR |
| Ga0307359_1005671 | Ga0307359_10056712 | F020363 | MCCWRRVGVARVFALVMRCRVMRLVVNSRVGKNRDTRRESPAGAGAGRTADHLTILFSQKVLAVRKGNDLYRPVMGRYFFMIL |
| Ga0307359_1005877 | Ga0307359_10058772 | F067770 | MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRNGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGNKYLEKIAKLQTVKNKKANR |
| Ga0307359_1005999 | Ga0307359_10059992 | F031881 | MKNFEFKINKKITPIRTGENKFKFAIDKSGITNINITQDKIEDVIYSIFDDSEYMDVVKVITNVKGKQKIPKIFLQGAQYSGNGLIPSSGCGFVDTTDLVLKEVDIEVEKLRMGMELCLDDLVNYSFEVHITDGARNEDLDISDALLAYFTQVLRANIQDYLFNDSTNGIIPKLQAGASAATVTAASELGKLLDIYNSLPEGWQNSTKANPIIFISPNLFTSIRGEIFSATAPITSSIEIINNRFKLPLTNASVITLPFLTGTKAYAGISNYLFAGTDLESDFENVRVWYSDDNETIRFSALLYLGSAIADIGDFVKYEPTQVINQ |
| Ga0307359_1005999 | Ga0307359_10059993 | F013091 | MSCKLTNGISLKDCDTPGGVSESYFINIEDVDTLTVTDFQVSALTLKSYTTAYKIAFEPQTSNFSSNAVGSVENSSAAFEQTCEIKINKIDNNVLEQVDALTKGRHMVIVKKADNTYELYFHEGGAKFLANYTTGTAFEDPSGVTLTATHRQPSNMLIVSSTVIATLTIAEETLP |
| Ga0307359_1008367 | Ga0307359_10083673 | F097599 | VLVFDRGACPNCYPNDSGAMFHNLQEPDMPDDETKGLLKTIADALTRREPAPVQHVNLTEFENLKKELETAKAQTAELVNLKQELETLKAEKATAEKDTKWNAMKANLPEGWLGAKEPETRKEFEADPGAFALKVVAFKNTQPQEQQAEGTGATGGSGDAESTEEQKFANMAAEVAKATGIQFV |
| Ga0307359_1012028 | Ga0307359_10120283 | F051952 | YTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRSIFTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHRSS |
| Ga0307359_1013960 | Ga0307359_10139602 | F070158 | ATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPNDFVNGEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMGVTRLKEEYRKKGLSVY |
| Ga0307359_1018077 | Ga0307359_10180772 | F035785 | METKKIEAETAKKMSENELMDAVWEAPENSVLEIFAADPDNQSGDNDGVYLEVVKLDDEESVVRDRWPNLDGTRHIVSTSDIYAIYRALVDQVEEVA |
| Ga0307359_1018330 | Ga0307359_10183301 | F017318 | INCDGINPSLGVFNFSLNDLPSYTEFTALFDLYKVERIEIEWLPEYTELSDAGLTSNAINVQFNSAIDPAGNTPSVYTDVLQYRTLHSTGISKRHKRDFIPAYLLDGIVPAACYISTASPSSNLWGVVYGIPATGTAMVFRSRAKFYLSMAQSK |
| Ga0307359_1019000 | Ga0307359_10190001 | F052619 | FNIVCDGINPTLSAFIFMLSQVPNSTDFTNLFDMYCLKKIEIDWVPEYTELTDAAPLSNAVNVRVNSAIDLTDNLAPASVNEVLQFQQLVSTGITKPHKRSWQPTFLMGGLVPCSCWLPTSSSTERHYGLKIGVPPTGVAMTLRAKVKYFVECANVN |
| Ga0307359_1019569 | Ga0307359_10195691 | F078767 | TDITDEILTALREAGCRTVGILPEVLMFSGNNNPFGFILLNSETTENDNGGVLTQLLDISIFIITQSGVNKMKEHCNVLYAAIGEILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR |
| Ga0307359_1020406 | Ga0307359_10204061 | F025291 | ASKNKQPNQRRGGNKPSVKSKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNYNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307359_1022101 | Ga0307359_10221012 | F080087 | MQATATVTSASEMEHATAWKTSETEYDVRVPARYREYTCAHRVVAIYRRYGIITDYQYRVSKKELREIERIVETRIEQTNNKGGHK |
| Ga0307359_1022219 | Ga0307359_10222192 | F025291 | MVNLNRQINIFRDRAWRVITYNYHLGDNSSTGLYTLNVGADQRYMTFQTLLITDEFQNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNVWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK |
| Ga0307359_1022255 | Ga0307359_10222551 | F015885 | MTVCKEIVDCVLANCSKLLPGIKDRAYFINFDCVDKDASTFDVDNALLLTQLVLKTTSPPCYAYCVEGYNFSNEHTVAMVKGRYQKTWDHNFVFRIFDNTPEVKEWIDNAIGSRFMVIIENNYNKNDGVEAEGRTVFEVLGWDFGLEINAAERDVNSDETLGGWVLTAGCSDTMKESLPPLAYFVGGTIA |
| Ga0307359_1024017 | Ga0307359_10240173 | F101222 | MSVWVAIAINIVVYLVSFAYAWGKLNTKIADIEKRYYELNEKVSDIMECSIQKEQYKSEQHNINRRIDELTSLDIDARLTKIETLLETILGE |
| Ga0307359_1029801 | Ga0307359_10298011 | F056642 | MEKLCNCYAQSENQFKQEIYIPPVITVLEITLEKGFAASSASGTEDWGSLTW |
| Ga0307359_1032220 | Ga0307359_10322201 | F079671 | RVLLFRVQPLEPKWDCENPYEEDEVRIAVGAEGKAWLDEVAEMFDDRAPLAQEMDEVKERLLDCLEAYVGLGDRILSIRRSIPPEKAHEAQKWAAYYSRIEAEQEVLAELLERWRKVLGEIVRAEDLPRNQALLDLLAVYNVVNRRELAVGEDGTLFEKPLFEERYFIERAGLADEYYHNVLVYGFVEFLRVAGNRKRLRRCPACSAFF |
| Ga0307359_1032507 | Ga0307359_10325072 | F020914 | MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGLTANAVTTVLPSILIKEGIQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSADESAEKVEAF |
| Ga0307359_1035077 | Ga0307359_10350771 | F068879 | RPVYVIGAPWRDNWVTKEEGFVAGATARPGYRRGFPPGVTVFANARINKTTS |
| Ga0307359_1035881 | Ga0307359_10358812 | F059998 | LELAKLNPTLSGQPLTEKAKKYFLHEIRSRRWELGRGRQVTPLTETGAIVSDAHGWPVSFQDVIREIAGEMFELPEKKTTVGVMTQDEYISAMRAATTPEQQIEVMNAWTEQQKRK |
| Ga0307359_1036125 | Ga0307359_10361252 | F077341 | MAEMLWGFGGVKFVYGTTEMELPHCYGKLGFQELKNTWRTKSGNLKVQHKGFIPVITITMWNLGTWGASVFNMASLIQMLNAAKTEGIMIYPRYEYDNDLGYLCILSSDINPEDFSQNVAAGQTLELSFIGKQ |
| Ga0307359_1036664 | Ga0307359_10366641 | F077368 | SNKMSLNRQIQDSTMLEVSYYHNLIDYQNDARDLFTYMNSVSNDFSQYRDIYANFKIMRVTFETVPAYAFTTTPSDNAMGLFGVRQGVYEASPVTQSVSTLVQYPGTRKLHNYKYLTYSVAVNNGDWFTNTETNSATSRVAKLTYYCAYYKVATTNTAQSIVQVRVVLAAKCRLI |
| Ga0307359_1038529 | Ga0307359_10385291 | F035785 | TAKKMSENELMDAVWEAPENSVLEIFAADPDSLAGDNDGVYLEVIKLDDEESVVRDRWPNLDGTRHIVRTKDIAAIYRALVDQVEEVA |
| Ga0307359_1040835 | Ga0307359_10408351 | F029768 | VLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNSILQETESKIEQAIKEIEQEQEK |
| Ga0307359_1043287 | Ga0307359_10432871 | F092121 | MPKHFYTLLIIPHKKKDSVKKFLATPLHFRLTAVVSCIFLGFFGYCAVDYLSIKLAQMELANLRQLTSTQQEQIDTLQEKISFFERKLADLRQVDEKIRAMASEVTGKARRSSKHQAAEA |
| Ga0307359_1046111 | Ga0307359_10461111 | F078674 | ANMDALKKAIENRRAPFEVEGKAGGRVISLRVTEKMEQLLEEQAQEWNMSISDTLRGILNFYFLPPVLYEAWEKKVQELIDLDTEQKGENRADMSAPTHAQRIEPVFCDSEEAEEYANFIHELWDKNLRYWEILREEAVTANRIAVKQLTETAEALKRCKYALPERAE |
| Ga0307359_1046644 | Ga0307359_10466441 | F022205 | LRPHAVEVRYAHINPVGIRFRIYAGNGEEVYVSPALVAGPAPQVFKARLPANTDFAMYGPSQIVMDFAGASTWAVRLTMAHKENSA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |