3300029668: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36119

Overview

Basic Information

• IMG/M Taxon OID: 3300029668
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283871 | Ga0245235
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36119
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 146982308
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055715	Metagenome	138	N
F067720	Metagenome	125	Y
F068941	Metagenome	124	N
F081354	Metagenome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245235_100022	All Organisms → cellular organisms → Bacteria	262057
Ga0245235_100084	All Organisms → cellular organisms → Bacteria	150370
Ga0245235_100406	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	56617
Ga0245235_102582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	7900
Ga0245235_134843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245235_100022	Ga0245235_100022197	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFIYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG
Ga0245235_100084	Ga0245235_1000843	F068941	VSLKEQYLDKGVERMDNKKFIIGVILLLLLMIGGTYAYYKWSSSDNMNVNVKIDGGTVTFDGGTNITSTIMPTATKEEGIKKDITVKASKEGVTMNLYMDLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGISYATSGVTTLTLFTGRDVSTSNTDKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN
Ga0245235_100406	Ga0245235_10040616	F067720	MSSTTYEHFVDTNKMYATHGRFLGLTKTYHLGNVNKLVTFCHRFAALGTMVRNAGQLPQPFWLGAGFGGGSHSLSASVARA
Ga0245235_102582	Ga0245235_1025821	F055715	LTKANEFDRINELLIERTAKKFERASKNKLKKFLTNERFYDKINELIRVGTAKILDN
Ga0245235_134843	Ga0245235_1348433	F081354	VRENQQSSAHNFVKDFSLIFLKFSRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR