3300029666: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_80m (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029666
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114292 | Gp0306343 | Ga0265600
• Sample Name: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_80m (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 51898341
• Sequencing Scaffolds: 5
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → lake → saline water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Canada: Sakinaw lake, British Columbia
• Coordinates
  • Lat. (^o): 49.68
  • Long. (^o): -124.009
  • Alt. (m): N/A
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F033389	Metagenome / Metatranscriptome	177	Y
F046170	Metagenome / Metatranscriptome	151	Y
F071959	Metagenome / Metatranscriptome	121	Y
F076133	Metagenome / Metatranscriptome	118	Y
F088317	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0265600_107919	Not Available	1130
Ga0265600_114177	Not Available	812
Ga0265600_122566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	621
Ga0265600_125034	Not Available	584
Ga0265600_126404	Not Available	567

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265600_107919	Ga0265600_1079191	F046170	MIRIEDFGEIGYGGLVTLTEWWDNKRIDEGKIGAKDVFKKASFYTYLGVGLTATLMSVFGWMKRYERWEEHVSHGFLYDLPRFAYGLTKALGAGGKRGSDSSAVQEAQRILNEKMRAKALGSGRTADRSYQQEFETVAPHAF
Ga0265600_107919	Ga0265600_1079192	F071959	MASRNYLVMSNDMTFTDKKEYRTKALAAGLERCGTKSIGDINSDVPGLQAIPIANKSARVAAIKAYIETGAWPKTIDQRELAPLTDFVAAAAQDFWQTIALGAIGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVGGNIQAQFDMQPLGTRLETAAFFSEPVVIDPQELF
Ga0265600_114177	Ga0265600_1141772	F000344	MRPIHPHAAESGVGKHTARNCESAQACAAGKERVANAHP
Ga0265600_122566	Ga0265600_1225661	F088317	PEENVKYPERPKLTSADVNKAAPKTRRDHYKGAQTPPMPEMDKSQIMEWVETGKPEDPSRYVMMPPREVPYRKLPLAVKFVSCNTRHLKEIGAFRTMLPEIFGDAGYKAVDDAYASFADGEFRTAQSRGMLKNAPNCSLQEIAAHICTVYDIQNFPIVIAEADYDNEIVRIQLYKGLPRHCPYDVREGDYRLCAATAGYERELVKM
Ga0265600_125034	Ga0265600_1250341	F000344	MRPRHPHAAESGVGKHTARESESAKACAAGKERVANAHSHKL
Ga0265600_125034	Ga0265600_1250342	F076133	GGFDPCADAVTPEGFGCYCADQNAVTVSGGPTPPKGLARSTSEARKEIGTAGRERTWQSP
Ga0265600_126404	Ga0265600_1264042	F033389	MVSHRAKNKTNAKKLATKMRRKGFASNVFKKKKGYGISVTRK