Sample 3300029663

Basic Information
IMG/M Taxon OID	3300029663 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116197 \| Gp0321322 \| Ga0307335
Sample Name	Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asp2 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asp2 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	50708945
Sequencing Scaffolds	24
Novel Protein Genes	26
Associated Families	25

Dataset Contents

Total Genome Size

50708945

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	1
Not Available	12
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009

Ecosystem Assignment (GOLD)
Name	Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Type	Engineered
Taxonomy	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Ecosystem Assignment (GOLD)

Name

Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Type

Engineered

Taxonomy

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015605	Metagenome / Metatranscriptome	253	N
F015885	Metagenome / Metatranscriptome	251	Y
F020914	Metagenome / Metatranscriptome	221	N
F022444	Metagenome / Metatranscriptome	214	N
F029768	Metagenome / Metatranscriptome	187	N
F031111	Metagenome / Metatranscriptome	183	N
F036251	Metagenome / Metatranscriptome	170	Y
F044576	Metagenome / Metatranscriptome	154	Y
F045183	Metagenome / Metatranscriptome	153	N
F049017	Metagenome / Metatranscriptome	147	N
F051952	Metatranscriptome	143	N
F052619	Metagenome / Metatranscriptome	142	Y
F055836	Metagenome / Metatranscriptome	138	Y
F059033	Metagenome / Metatranscriptome	134	N
F062800	Metagenome / Metatranscriptome	130	N
F068879	Metagenome / Metatranscriptome	124	N
F070165	Metagenome / Metatranscriptome	123	N
F077342	Metagenome / Metatranscriptome	117	N
F078767	Metagenome / Metatranscriptome	116	N
F081379	Metagenome / Metatranscriptome	114	N
F086646	Metagenome / Metatranscriptome	110	Y
F088944	Metagenome / Metatranscriptome	109	N
F093911	Metagenome / Metatranscriptome	106	N
F094051	Metagenome / Metatranscriptome	106	N
F101223	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0307335_104612	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1500	Open in IMG/M
Ga0307335_106421	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
Ga0307335_107244	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1198	Open in IMG/M
Ga0307335_108441	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1104	Open in IMG/M
Ga0307335_108768	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	1083	Open in IMG/M
Ga0307335_110937	Not Available	957	Open in IMG/M
Ga0307335_111396	Not Available	936	Open in IMG/M
Ga0307335_111571	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	927	Open in IMG/M
Ga0307335_113357	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	855	Open in IMG/M
Ga0307335_113964	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	833	Open in IMG/M
Ga0307335_114032	Not Available	831	Open in IMG/M
Ga0307335_116107	Not Available	766	Open in IMG/M
Ga0307335_116309	Not Available	760	Open in IMG/M
Ga0307335_116871	Not Available	744	Open in IMG/M
Ga0307335_117511	Not Available	729	Open in IMG/M
Ga0307335_117797	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	722	Open in IMG/M
Ga0307335_118495	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	705	Open in IMG/M
Ga0307335_119010	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	693	Open in IMG/M
Ga0307335_119352	Not Available	685	Open in IMG/M
Ga0307335_120850	Not Available	656	Open in IMG/M
Ga0307335_121866	Not Available	637	Open in IMG/M
Ga0307335_124665	Not Available	591	Open in IMG/M
Ga0307335_128755	Not Available	540	Open in IMG/M
Ga0307335_129002	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307335_104612	Ga0307335_1046122	F077342	MARTLNEFVSSTGNYVYEITDAKMAGVDLTDFNVAVLLHCVLANELERDFIVFSKGSIEQVFDISAQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAEQQRREILNPKRIF
Ga0307335_106421	Ga0307335_1064211	F044576	EEALLVEDLHTGELVVERANGEKWVLDAKKGWCPWGYEFEGRRVRLRFGEVTSVLVNDRGERFEFWTDKQIE
Ga0307335_107244	Ga0307335_1072442	F068879	RDNRVTKEEGLVAGATACPGYRRGLPPGVTVFANARINK
Ga0307335_108441	Ga0307335_1084411	F055836	WIFPLRRMQWEYGNNMGAQGRSRPTSPVRSRSQRGMELSEGGVVTIYKKKWSRQFLGFIAVTMRWPMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFRQDRELVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLRGRVFSVVETVERVTEKHGLQKEQTTVAILGVGEIGAAIISNLEEKGYRAVGIEIRIADGRVEIGREGMERLKGADLVVVQTPRGDDVVPYYGNLKDTAILIDDSHPRITVRPDDVKFYKVAIGRSGVEFRPPLPGYEKYWIPGCVQESMVVAESGKVDLSQEDFNRRSKELGFFAH
Ga0307335_108768	Ga0307335_1087683	F093911	DFMRLYDAYKNGEITRTEYLAYLDFGYKPSDSVFLTQNRSTEMVTISYLSMGNNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI
Ga0307335_110937	Ga0307335_1109371	F051952	MPKNPRQTIAPDHFTTTALSENSWRILGKVTENEVTLVRYFLSKIVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVFTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLRVLTRFPKKFKPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN
Ga0307335_111396	Ga0307335_1113961	F078767	TNQITDITDEILAALREAGCRTVGILPEVLIFSGNNNPFGFILLNSETTENDNGGILTQLLDISIFIITQNGINKTKEHCNVLYAAIGKILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR
Ga0307335_111571	Ga0307335_1115711	F088944	RTPMKNEEFEKELFEIYLDSLEDRFDFDEDKQKIESLTTEAGEANIIVEQNNIEPIETQVLGTIRQLSHSGKLINYVPVALQENGLYLVMKVSPFIHYALDTDIIAPGYSGQYLIDPYNNFLLYTEEIEDSVVLDYLDLMTIFELQEALEKSIKEKQEGKGIDYSAIQDKWKLEFRFKEYQLTSYFRLRDQDANALDLTPMIDLLVKKEGLAMNKYAAARPTLTQAFDLMRQPETSNIFYALTHTLVKEPDGGILLYPDEDYIGKLGKIYICTECVFEGYIPKQLWLGLRGFKDLKSIQEWLNISIKI
Ga0307335_113132	Ga0307335_1131322	F020914	MAIYQKYGFAIDQILSENQALPSATSEDSANTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTVGLTANAVTTVLPSILIKGGVQTDDSWDSGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR
Ga0307335_113357	Ga0307335_1133571	F045183	MKNKETLKRLSDRLLRPALRESEIIKTLSGLPGVRPFLYEFKLGPLFLISAWLFLFHANYTGAAEEWLLYFFGAGAVVGVLSVHKAVMRFLYRIAQFEKPVEGQDRTIMITA
Ga0307335_113964	Ga0307335_1139641	F081379	PSFDSSEEARPYVKITATQEAAETDLYLYALGNVYEANHIQLHITVGNSDESYSIERKEVDLILTINLKTGFQTIAKIVGYIGLINNALGKTIISCSFDASKSSYSISSAVRTYFNSYRPGRCANLVRILTFDDGVFIGNFPESGDPWKDSNTIVPLASMPLVAGVETYIMLSPNEMLSVSGGGTAGKKVYITPQRNY
Ga0307335_114032	Ga0307335_1140321	F070165	MRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDINVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307335_116107	Ga0307335_1161071	F059033	MPITTANLQTLAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNIPSFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQPIPIVTDTTTNKQMNIFKWIFSAYFTLIIPS
Ga0307335_116309	Ga0307335_1163091	F070165	MGRTKRRVRNIRSTSKQTLTHTAVFTMGGPTSISASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMLDLNVSVKVGCLTTFEYKYLTGAHGDLRYEPAVIEVV
Ga0307335_116871	Ga0307335_1168711	F052619	EDASFNIVCDGINPTLSAFIFMLSQVPNSTDFTNLFDMYCLKKIEIDWVPEYTELTDAAPLSNAVNVRVNSAIDLTDNLAPASVNEVLQFQQLVSTGITKPHKRSWQPTFLMGGLVPCSCWLPTSSSTERHYGLKIGVPPTGVAMTLRAKVKYFVECANVN
Ga0307335_117511	Ga0307335_1175111	F101223	MTEVTQEDLETLKSELNEIIKTRLDSFIDEFIATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMIGIDFYLHEVDPVTGKEYNSQGTITNADVVVLDLQPEMDLETFSLIKRNTLDYVIKQAQEAQAKEKAMK
Ga0307335_117797	Ga0307335_1177972	F031111	KKEKSRFLVGKKRYISTIPQNSYYQIIVNIPAAYNFSCYYPQNLLSSQIGKQVKEILKPLSLALIKLFKPQLTL
Ga0307335_118495	Ga0307335_1184951	F094051	QAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVY
Ga0307335_119010	Ga0307335_1190101	F022444	VIQKLKGNSDYHVVEVVRASLKRFGVVKAGLRKDSFVLRIETAAGSDEGRRTAAGWLCFDGEPDALFYLFHVWFRHIKTNITVLDDAMADTVDLVEKAMGIAVREGGFGNEVLKDMIVRAVGRLASVSFTAGVYLHEDRFDSEVADGCSRHNGVHDELAHLAATGALDVQNQKHLKMLEAWMAARQA
Ga0307335_119352	Ga0307335_1193522	F015885	MTVCKEIVDCVLANCSKLLPGIKDRAYFINFDCVDKDTSTFDVDNALLLTQLVLKTTSPPCYAYCVEGYNFSNEHTVAMVKGRYQKTWDHNFVFRIFDNTPEVKEWIDNAIGSRFMVIIENNYNKNDGVEAEGRTVFEVLGWDFGLEINAAERDVNSDETLGGWVLTAGCSDTMKESLPPLAYFVGGTIAT
Ga0307335_120090	Ga0307335_1200901	F029768	HYGKIIVCKKELKMLDSVLREQEKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKANYFLFQTVEYLEFLEQAKVMSNHSLRFMERATEKMNGILQETESKIEQAMKEIAQEQEK
Ga0307335_120850	Ga0307335_1208501	F062800	RGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307335_121866	Ga0307335_1218661	F049017	SSITVTSNDISAITMSDTTKFREFGADIDSIKFTIEGTGSASYSEVQKLEAKFSKKTTALITAKNSLLDAVACGVAIIRVDNNGSAWLSGYTVKDKNRRAYNKITTNFDTGAKPSDEGTAAYTITLEAEGFDDELAFDATLNTAIVGGSATFIDYN
Ga0307335_124665	Ga0307335_1246652	F036251	MSAKDRQTVLFGDTGVVAPIDTTDRVRLSDGAVFVAQRIEIRPSNIYGEYVVFDGEDLDGKDFHAYSTSSVVLQQAKALLEKYGGEKGALTHDVLCAVKSVLSVNTGRRFLTMV
Ga0307335_128755	Ga0307335_1287552	F086646	VDIEDDEVLPCYDTEHELRISQGIAFKSVKILTGKTQETYPYWEVFLDMSYSNSTELRDVIFKDLPGESGIYMLNIWFDYDGEDINFGDDFKKLCEYRHKWDDGWICSKCGVRRADWIESDIKTTTREESY
Ga0307335_129002	Ga0307335_1290021	F015605	VEYPLFQTPSHGSHYGSKAYLNAENWNLTLKPLPGGRATGAFLQLSVPKNYYGSNFYSVGEQGTQAVLSKVEGELKEKGVHTPLIEADMSRVDTFKNIEPEEPFSSYYTLFSLLKARRAIQRGYGTTFLLSNSQQEFCVYDKLEEMRERNIETRGLPPTMRFEHRLLNKQKIQNVYGMS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029663: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Asp2 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences