3300029658: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Lys1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029658
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321353 | Ga0307366
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Lys1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 44067015
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	2
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064746	Metagenome / Metatranscriptome	128	N
F074841	Metagenome / Metatranscriptome	119	Y
F082739	Metagenome / Metatranscriptome	113	N
F097412	Metagenome / Metatranscriptome	104	N
F105254	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307366_116679	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.	706
Ga0307366_117867	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	675
Ga0307366_121049	Not Available	607
Ga0307366_123349	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	567
Ga0307366_123668	Not Available	562

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307366_110001	Ga0307366_1100011	F105254	LERGKKLMAEVATIYRLYGAAGTKYSLAGKTGRFCTQDSDPGLNNPCKIPPQGETYYSYRTTDCIGITGDFNQVRDIYIHCDGNFASEWGLDSGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQATGTPGTTGHSIDDGSNGHPYYKDETEKVRDFDTCLANSPLLIDSGPYTDDFYSKAWVLSLKIVPTATYGAKSPKSVIVTYNIF
Ga0307366_116679	Ga0307366_1166791	F064746	MAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWVNSSGDVSKYKPADLEDQFGIPDGAYDWTGFADYSAFDYRSGEPSGSITKAGWAHIFVLKPDEDLADSSSIDILKHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSLGAVAFFLDDNTVALIGVETTNDFGMSAWDVINSITV
Ga0307366_117867	Ga0307366_1178671	F082739	GGYEIQGDTNMRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPVDTNGTEDISDDILLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGAQFNIHPAKLCGGVDIIRVDADGYATELSGTDQVVSATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDTAPFVNEATVNGETANATVEFV
Ga0307366_121049	Ga0307366_1210491	F074841	VEKYFSDFLNLCNSQEGSSMKKMSEKTKKEVLKDLEFFFGKPPYESEYVRHHLTSGLFEEACLMKYGYTPIELMIGLDHIQLSKKQKAEAKKDLKMYFGEPPVSKEAIDKRLSSGLLEMQILAKYLMTVEDLMKEVGFKISK
Ga0307366_123349	Ga0307366_1233491	F082739	GTEDISDDILLPAVLGDLLPDGDGDGFFDVSYVLKKNGMVASTNPGQLYGVITVNNTTATTFTVTDAFGPQFNIHPAKLCGGVDIIRVDAGGYATELSGTDQVVSAAVDNDANTVSLEIALDEPLATDEELMIYLKFQTALKKMLPDTNTFVNEATVNGETANATVEFI
Ga0307366_123668	Ga0307366_1236681	F097412	TQKPNARRKKMSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKFNRPSYQFAVTGDDPKVPLVWSVSAKGALQQIIGIMKANGLTTLVGGVLQVAVAGDGTERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAQKGGLGDGASGKREF