3300029654: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Cys1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029654
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321315 | Ga0307328
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Cys1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33355551
• Sequencing Scaffolds: 18
• Novel Protein Genes: 19
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012026	Metagenome / Metatranscriptome	284	Y
F022205	Metatranscriptome	215	Y
F025291	Metagenome / Metatranscriptome	202	N
F031111	Metagenome / Metatranscriptome	183	N
F035785	Metagenome / Metatranscriptome	171	Y
F047076	Metagenome / Metatranscriptome	150	N
F062800	Metagenome / Metatranscriptome	130	N
F068879	Metagenome / Metatranscriptome	124	N
F070165	Metagenome / Metatranscriptome	123	N
F070166	Metatranscriptome	123	N
F081379	Metagenome / Metatranscriptome	114	N
F093911	Metagenome / Metatranscriptome	106	N
F101223	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307328_101408	Not Available	2150
Ga0307328_104897	Not Available	1219
Ga0307328_108842	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	877
Ga0307328_109338	All Organisms → cellular organisms → Bacteria	848
Ga0307328_109670	Not Available	831
Ga0307328_109723	Not Available	828
Ga0307328_109807	Not Available	824
Ga0307328_110663	Not Available	782
Ga0307328_110809	Not Available	777
Ga0307328_110905	Not Available	773
Ga0307328_111575	Not Available	746
Ga0307328_111798	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217	738
Ga0307328_112779	Not Available	703
Ga0307328_112942	Not Available	699
Ga0307328_114857	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211	641
Ga0307328_119645	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	540
Ga0307328_120317	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	530
Ga0307328_120572	Not Available	526

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307328_101408	Ga0307328_1014084	F047076	MTNGELLALAQLIVPELTAKAFVQFYNIAFEKISREVRLRTQILKPNNVNQYEDLRKLDIVKIDSVKDSSGDDIFWEVRHRKLLIYDSNRELITNETVGNHNLEIEYWESISGAIKPFPTDTGIEIDPNAIEEWNKSIPSISDVEVQLCALYLMITELAGIFPMEPGTVELYANKFSGAFQAVKTKYNSGNSPATIT
Ga0307328_104897	Ga0307328_1048971	F070165	MVRMKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLHYEPAMIEVV
Ga0307328_108842	Ga0307328_1088421	F081379	MKLTTLGAADALGTPIPVFIPDTYRTRLVTTTTGVVTTPSFDSSEEARPYVKITATQEAAETDLYLYALGNVYEANHIQLHITVGNSDESYSIERKEVDLILTINLKTGFQTIAKIVEYIGFINNALGKTIISCSYDASKSSYSISSAVRTYFNSYRPGRCANLVRILTFDDGVFIGNFPESGDPWKDSNTIVPLASMPLVAGVETYIMLSPNEMLSVSGGGTAGKKVYITPQRNY
Ga0307328_109338	Ga0307328_1093382	F012026	NLKEAQAQTAALISKRAEAINILHRLEKVEDRFNPKIIAEINGYKQAIEELSKELNRLEVEKGALLEAEEGARKEYITALAAYDELYGRFPNAEKEAGELLKRYAKHVEAARRAREILMEKMTALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGD
Ga0307328_109670	Ga0307328_1096701	F025291	NRINGKNKHYMVNLNRQINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLITDEFQNMAIVYNEFKIHKAVFTSLSTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKSLTAQSCEWDLKGLGPNFNIWLDTGATIPGQFQIGNYIFGSIPINLGWEVKFQLVVEFTNPK
Ga0307328_109723	Ga0307328_1097232	F101223	KSELNEIIKTRLDSFIDEFIATWNELENKESESEGCRSCESDNSDTENPARYLIFAGGNKFFATDIKPNAMVGIDFYLHEVDPVTGKEYNSQGTITNADVVVLDLQPEMDLETFSSIKRNTIDYAIKQAQEAQAKEKAMKAENSKIPPDVSHISYG
Ga0307328_109807	Ga0307328_1098071	F062800	LQSVTSGAIARPMPAKFRVRMTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV
Ga0307328_110663	Ga0307328_1106631	F025291	ASKNKQPNQRRGGYKPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMAVVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307328_110809	Ga0307328_1108091	F070166	MNIDNYVVQIHKRTKRITLQRFLVSKIAYGKDFSLIELAALFHNQLWLQTKCSTDAQFRERYGNTLEALAKILKDCNFSRGLQPGTIKSVKAKLLAQEWDFLFPQRNMQNMEAQLRNSIFTTWRKSQGVEISKLPPKKHIGKGYRDHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTYKEIISRIKRTIQVREAIKRIDPNWRNTQVAEASGGKVIPKKVG
Ga0307328_110905	Ga0307328_1109051	F070165	MRRRGRNARRSTQTLTHTAVFTMGGPTSVSANNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPAMILTH
Ga0307328_111575	Ga0307328_1115751	F035785	MIRIEAENALKMTEQEMLDVVFEASENSVIELNVADPNPQAGDNDGVYLEIIKLDDEESVVRDRWPNQDGDRHIVSTSDIYAIYRALVDQVEEVA
Ga0307328_111798	Ga0307328_1117981	F093911	RTEYLAYLDFGYKPSDSVFLTQNRSTEMVTISYLSMGNNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI
Ga0307328_112779	Ga0307328_1127791	F068879	NRSVYVIGAPWRDNWVTKEEGFVAGATACPGYRRGLPPGVTVFANARIN
Ga0307328_112942	Ga0307328_1129421	F070165	MTASLTSRLTTKSLGKFQNRLLGSLTGFQVPVDPGLSKRTEMVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPA
Ga0307328_114857	Ga0307328_1148571	F031111	NQVLFSIFKNKTRRKKEKSRFLIGKKRCISYIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLFKPKISFSKNN
Ga0307328_118312	Ga0307328_1183121	F070165	RPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSGLDVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV
Ga0307328_119645	Ga0307328_1196451	F031111	MKNQVLFSIFKNKTRRKKEKSRFLIGKERCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP
Ga0307328_120317	Ga0307328_1203171	F068879	PNRPVYVIGAPWRDNWVTKEEGFVAGATARPGYRRGFPPGVTVFANARINKTTS
Ga0307328_120572	Ga0307328_1205722	F022205	LNLRTMRHRNKRFLLPYNKFLDTQENTSKITAGGFGFPLTRPMRPHALEVRYARASPAGIRFRVYAGNNEEVYQSPALVAGPAPQLFRVTLPANTDFSLYDNAQNVMEFGGSATYAIRLIMAHKENTA