Sample 3300029652

Basic Information
IMG/M Taxon OID	3300029652 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128792 \| Gp0224293 \| Ga0206099
Sample Name	Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3_20-13C (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0128792 | Gp0224293 | Ga0206099

Sample Name

Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3_20-13C (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	32296331
Sequencing Scaffolds	29
Novel Protein Genes	33
Associated Families	32

Dataset Contents

Total Genome Size

32296331

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	21
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → cellular organisms → Bacteria → Nitrospirae	1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium

All Organisms → cellular organisms → Eukaryota → Cryptophyceae

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia

All Organisms → cellular organisms → Bacteria → Nitrospirae

All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales

All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta

Ecosystem Assignment (GOLD)
Name	Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Ecosystem Assignment (GOLD)

Name

Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	desert biome → desert → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

desert biome → desert → soil

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	33.305	Long. (^o)	-116.2547	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: California

Coordinates

Lat. (^o)

33.305

Long. (^o)

-116.2547

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000736	Metagenome / Metatranscriptome	914	Y
F001024	Metagenome / Metatranscriptome	803	Y
F002178	Metagenome / Metatranscriptome	586	Y
F002454	Metagenome / Metatranscriptome	557	Y
F005632	Metagenome / Metatranscriptome	394	Y
F007793	Metagenome / Metatranscriptome	344	Y
F008470	Metagenome / Metatranscriptome	332	Y
F009507	Metagenome / Metatranscriptome	316	Y
F010515	Metagenome / Metatranscriptome	302	Y
F013276	Metagenome / Metatranscriptome	272	Y
F017262	Metagenome / Metatranscriptome	241	Y
F018339	Metagenome / Metatranscriptome	235	Y
F023352	Metagenome / Metatranscriptome	210	Y
F033058	Metagenome / Metatranscriptome	178	Y
F034425	Metagenome / Metatranscriptome	174	Y
F034481	Metagenome / Metatranscriptome	174	Y
F036560	Metagenome / Metatranscriptome	169	N
F039655	Metagenome / Metatranscriptome	163	Y
F042748	Metagenome / Metatranscriptome	157	Y
F044534	Metagenome / Metatranscriptome	154	Y
F049453	Metagenome / Metatranscriptome	146	Y
F052615	Metagenome / Metatranscriptome	142	Y
F053640	Metagenome / Metatranscriptome	141	Y
F055478	Metagenome / Metatranscriptome	138	Y
F058016	Metagenome / Metatranscriptome	135	Y
F070907	Metagenome / Metatranscriptome	122	Y
F073141	Metagenome / Metatranscriptome	120	Y
F075770	Metagenome / Metatranscriptome	118	Y
F089751	Metagenome / Metatranscriptome	108	Y
F094695	Metagenome / Metatranscriptome	105	Y
F104572	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0206099_104030	Not Available	1015	Open in IMG/M
Ga0206099_104607	Not Available	950	Open in IMG/M
Ga0206099_104730	Not Available	936	Open in IMG/M
Ga0206099_105188	Not Available	895	Open in IMG/M
Ga0206099_105202	Not Available	894	Open in IMG/M
Ga0206099_105290	Not Available	886	Open in IMG/M
Ga0206099_106201	Not Available	817	Open in IMG/M
Ga0206099_106289	Not Available	812	Open in IMG/M
Ga0206099_106326	Not Available	810	Open in IMG/M
Ga0206099_106434	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	804	Open in IMG/M
Ga0206099_106549	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	797	Open in IMG/M
Ga0206099_106632	Not Available	792	Open in IMG/M
Ga0206099_106686	Not Available	788	Open in IMG/M
Ga0206099_108519	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	696	Open in IMG/M
Ga0206099_110281	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	634	Open in IMG/M
Ga0206099_110634	Not Available	623	Open in IMG/M
Ga0206099_111358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	604	Open in IMG/M
Ga0206099_111475	Not Available	601	Open in IMG/M
Ga0206099_111917	All Organisms → cellular organisms → Bacteria → Nitrospirae	590	Open in IMG/M
Ga0206099_112865	Not Available	568	Open in IMG/M
Ga0206099_112970	Not Available	566	Open in IMG/M
Ga0206099_113533	Not Available	554	Open in IMG/M
Ga0206099_113798	All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales	549	Open in IMG/M
Ga0206099_113944	Not Available	547	Open in IMG/M
Ga0206099_116328	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	508	Open in IMG/M
Ga0206099_116518	Not Available	505	Open in IMG/M
Ga0206099_116769	Not Available	502	Open in IMG/M
Ga0206099_116798	Not Available	502	Open in IMG/M
Ga0206099_116935	Not Available	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0206099_104030	Ga0206099_1040301	F042748	MTRSTEMRAVYGLVFSTLALAVVVCLSVNSLESRAAAEVELFQQPADATMLKTEHFVPHNPFEDPELRPKYEVDTAKETKNSEADFKAARDEIKKGMGIMKAVLEKLTKQDDARDKLMDEAIGISDRIHSVRHLLINVKAEALGIQTKEDGNWIFTNPFGKGADPPNQDLAPFKKQVKDLTAKTEVINKDLNDLVKRTHSARNDAIVLDSDLYDEIHKAKLISADAVQGIHHHLDRVESFNHQDYDVVHRVDAKLNDKFRITRHRLNGMINLANAMSARQPNEVSEVTALATDLLIVNAETQERLKRMQDLLDNIEFERGFRAGK
Ga0206099_104541	Ga0206099_1045413	F055478	MNPLIQQPGTREDLPRWGRRGMDDLTVEALARLHQTLDGWIRQRAHDPERPRRRPWVRHPHTAHPA
Ga0206099_104607	Ga0206099_1046071	F094695	MADSQSAVSAIRASARTWDAVQRFRDEFDRVFVGPTLPVRRLPFPGASFRLSLSVVVRRVSRLRHSSLRLTCLLEALPSINWPRMRTRGRLSCDFVPYSARQKQASVSPGDSNLRHCPSSGFLTLSTSCSACNPGQLVSSGLRSWGSTGSAYSPPPFGGGRVKRAWVSSPKRSPFS
Ga0206099_104730	Ga0206099_1047301	F002454	TSFSLGRPTDGLNYQRLTVQFPSPKDNGNTPATFDINFNVIALNNAPVIDVNNNTNDMVSITLVNGEKFQPSIVISDEDISNGNADIKITFAPADGSSLTFVDRSTNTVVKSTDIIETTADSVTLRGKLLSINAILSGFVFTPKAVDSSYTFTITANDNGNSGQCPVGKDGKPIPLDRLLYDASSICPLSTKAQVSVSYVDPTQLKTVAIAGSGAAVLVLGLIGAALAVRAFNKHAESAGYKPWDVFHESDAVLSNPLYEEAALGGASGIYEGKSNKDLLGSSSESPNYVGMDKQETN
Ga0206099_105188	Ga0206099_1051881	F073141	MATEVKIKETKDPDETELVKYLTELYDTTKITEEEITQWNENYSYKGFDRLKVIKDLMRKVPNIKEAQQIIMICGLVGPQRAALVKLINGRVVSSYGIPASGMKGSTGVSCQRITAATADLCAFLLKKVNIPKRLNLPLPGWLQFPSAGSIKLPADLREMHIEFARRFSTAIGGVFNEQIYNQMMANAYLDPKLNLFHNYELSLSEPAPSGLLPAPAPTFAPTRGSVGPPKTADSERAKALRP
Ga0206099_105202	Ga0206099_1052021	F034481	RMKLLSILSIVCFLVVLAAANHGDNEVGQQVVNPADWHGTWTSLNRYGGQTYTCPVGNTLYGVYSNAGFFVGTITDRVVEGVWFEGGRGDRNYYQGSFRITISDDNQEFDGVFNRLTTGNEIRWHESRLGAPYPSNPTLEECFAPDNTVENVLGSFYRSTETGALAGSTFICKDYWEQIYGSFHSPEGYLAGWSVDDATGFHGYRYDSTGESGAYILRALTRDRVKGFYWRGRLAIQNYPTSKYEAFDRSAFTASLTQCEQVGPGFVERLHGPDYVPYYLVNSSSIVSFSYLTFLLI
Ga0206099_105290	Ga0206099_1052901	F075770	MRRSLVVSLALAAMVNAPAVAQTCQGLASFSAGQLQVVGNAQFPEAAKIWGASISYGMPSGIYGGADLSTTSFDNDGGSSLGIGAHAGYQMKLGQSGKINLCPVASLALGMGPDDDEAELNSSSTDAHFGIALGTEMGSTRQLRILPTAGLGLQYSKFKQEIGGTGPGAGEIEASETYGLARIGVGFVFNQQISVRPTVDIPVGVEGGADPVF
Ga0206099_106201	Ga0206099_1062011	F033058	MGRTHSQKLWLTLCQAAKTRKRSYRRVLTWFAGRWRNHQSKRAEKPHSIIQSRKALDGPATRPTTPFAMENSVGKPAAARKGDAPNAGMGKRAWRTPI
Ga0206099_106289	Ga0206099_1062891	F001024	MFDGPATRPKTPLAVENSVGKLTALERVERLMSAWERESDEL
Ga0206099_106326	Ga0206099_1063261	F049453	MRPKTPLAVENGVGELAAHEAPNVSAGKRAWRTPIPKFPRS
Ga0206099_106434	Ga0206099_1064341	F023352	MRPKHPHAAESGVGEHTARESEGAKRVPTGKSAWRT
Ga0206099_106549	Ga0206099_1065491	F104572	MRPIALLAATNGVGDPAAHLTVERPMPEHGKESVASSH
Ga0206099_106632	Ga0206099_1066321	F044534	EQSQRGGPEKRRRERGWDNPGRPGKGWRQLVPPSPHDGGSRLGGIYHQFLWPESCPVSQYTNQELCGEARLETVLSRVRPTGRFDPCAEAVTPEGFGCYCADQNAVVVSGGTTPPKGLALRKSEARKETPAAGSERT
Ga0206099_106686	Ga0206099_1066861	F052615	VALGQRTAKSSGRPSAKRLRRGSEITDVSWPGPQAGGATTSPSELKSLTLASRGRKILDGPATRPETPLAVENGVGKLAAQAAPNVSTGKRVWRTPIP
Ga0206099_108519	Ga0206099_1085191	F005632	LDGAFSAVEVSPWRSVAARLEYDTEKWNVGLGIDLGFGLRIRAAALNMESLSAGVGWHHE
Ga0206099_108519	Ga0206099_1085192	F058016	MNFDHRNPRVRRGFAFVALAALLGLSVVGLSQCRLVDDTVTGVEMTSGSGTNARSDCVHQCNEAYKACKRAEDARHKQAKRDCGSDKACKKAEQRTHKDNKLACVRAMQECKRNCYNEGAGLGGR
Ga0206099_110162	Ga0206099_1101621	F000203	GMGVRHALFPVPALGARALGGAAGFPTLFSTASGVFGLVAGPSRALRLLDFE
Ga0206099_110281	Ga0206099_1102811	F070907	GTVDRVSPLVKESRRPRVVLLAGASVLLGLVALSALVAHMSEPTELLGQMLARGQDAREKTKVPKTVYAPPPEPADWDGSVAIIGKMPPTGVAPSGLQEAGFETRGSITVRRDLAAENMYFRIYGRINHHLKCTLRQYRRMAMEYQNEVIYTGFKRVYTGQSEIQTGHLPRTLNGEFDVLTIRDLDTGEVQYFRVH
Ga0206099_110634	Ga0206099_1106341	F008470	LLDELIVVIAKIVAGVPLEWGQIPEKEKRNVLICALHCCLNGPVGVNKETTFPLVGVAQINRLVPVSNSSWRGFCALVAKMLVDKNVKVDCNAIRLLTTYWPLVDWPVRKQKLVQ
Ga0206099_111358	Ga0206099_1113581	F053640	RTVAARRSEMVAESAIGILPGDRGKAGGSWCHPPLLAAKVVERHISPVPLAGVVSGQYTHESGTERRGTIRNRAESSQAHGRFRPVRQRSYPRGFRLLLCGPERSCGARRDDPAKRPSSTHEPGAQGNRSSGERTDLGKVRETSSLGWREKARHPAANAKAT
Ga0206099_111475	Ga0206099_1114751	F034425	LKSQNLLSANVWDFKDDRISNSMSDVPELNGSIKLIVTFVVFQERSFNRDTFVFRDDHVVLTSLSGVSIPFGMKSSSDDQFTFFVMVFSDTSFTHWFNFFDGTFISFNEENSVLSVLAGDFFKDSEHVPFTVVVSESINSEALVLIIVGDGLEEAGVTFSVPSSNFSFPFWRSTASTSVLSGSKGDKHQDKGEELHLYS
Ga0206099_111917	Ga0206099_1119171	F018339	TMLLTFSLPDGTRAGIRPTHDLKDLTIAQLGLDCLAQSGEASVVFHVSTKQALHRVRERFALTDC
Ga0206099_112865	Ga0206099_1128651	F000736	RRSNMSEDRAARRNRGGGASAAGEGVVGIPDALLQELIQAFTYIADPSGAGDVTTVKLTEDRLDRLVRSLGIKTSARDMMRDAGGKELDFIGFRDMMIARIKQSDSEENIRNNFQKFENTKGSGKISARELKTALKKMGRVPLRDSEIEEFLRIPGIESDGFIYYEKFMLEFFGEKSKSA
Ga0206099_112970	Ga0206099_1129701	F009507	VADIVVVDIGIKGVVVPVVVEESSRDWEAVFLRDKHVGLGLFASIAEQLGTERSTNGQVELFVVVVTHADLAERNITTFLLAGVLHVSEDGNVLVLVAKNELRDEESSVLADFVDEEVSTESCALFVVFIGDELESTEVLHLVVHGGNSFPPVGCAAV
Ga0206099_113245	Ga0206099_1132451	F089751	VDVYGQNATYDISYLRGLENCHQFDGAGRSDGLDFCAGLVPYNTWRWDDYTKLDNEAQCFFEELYNHFRVQPCWSGVTTDCNATLQQFACYESFRACDAQGFYVGTCRNACNSVVYECVNWFESVNLEHYNCTSSRYIDEESYYCTGVGSFPSFNPADSQNFFGNPDDILYLQENHFFLEQDI
Ga0206099_113533	Ga0206099_1135331	F002178	GFLVALLCTFIVGAIAQTRPVLNNDFEAKTMFVHRLANGTMRHIDGIWWEDYTNIRTAFDAEIRGVGRVDIITLFSDDPTKNSTEYFHIRHSNKCHDRSFLGKAFPVFSWVANAKMGSDCKHRHGGQGTSWVSTGTAPQPTVTLCANHNGTLPFWIDVKWATGEQRFADFFTYTAGTPNPSHFA
Ga0206099_113798	Ga0206099_1137982	F036560	ENLYGKHAAALYAQAGDFNKTARFYYMKAEDAYYLANSQASFDDWRRARRQWDYFYHRK
Ga0206099_113944	Ga0206099_1139441	F039655	RDMRAAVVLLAAVAAVAVAQPMTCIVDPGTIFVNTTCTVSAPKGATPGNNVTIQLAGVTTKSIIAGVFKFQIYEDYVPNFVSSGNIQYFVCTIKGCDTSDPIALTLASSSVPTNFTGIIPFVVPQPQKTGRYKVTFWGEDQDHYPYDVTGTLSLVQSCSTDADCPPGSYCKNGPGQSPPYSC
Ga0206099_116328	Ga0206099_1163281	F013276	KVLLVLALFVTLSFCQIQLLSPSGRGFSEFYSHYAPCGQGSTQVGSSIQWEHGTIHQIEVQVIGAGGGGVLFDRYSCVLNGDDANNLGPVFPIEGALKVAIPDSDFQIYDLYVQAPGLHCVGQATMQLVYATYNGQEYYQCQDLIITNTPNASSALTVNVLLVLFVAF
Ga0206099_116518	Ga0206099_1165181	F007793	PSVYMSEAQDLKDAFEAFAEGKPHLSKVECMMAIHALCKNPIQSDLNGAMSSMGDDISFAQYQQLFGKAWPRPDQQQSDLSKLMQMLDHDDNGKVQEGEFRQLLLSVGDVLSHQEVDLLFEEVPVDDQGFFRYDALVDKLVGGHMPGMH
Ga0206099_116769	Ga0206099_1167691	F010515	AMSKGPSKEALQDCFKAFDSEQHAHLTKSEVKVCVRAMGKTPTEKDIDAALSKLGEDVSFEQFQTVYNNPFPNPESFDADARSVLKMLDPNGSGWMAESEIRQILATIGEPMNHSDIDLLMEEVKVNDKGQFRYEDFVTMMVTGYLDAAQ
Ga0206099_116798	Ga0206099_1167981	F017262	AKPTTCPRPKCELQCSKPACDVKDKQRCCKCGAKGAKRALAAAPRFEEVHGDAEMMPSFMEVVATFQHGAQNGVEECCPCKAAKRK
Ga0206099_116935	Ga0206099_1169351	F002178	DFSARTVFAHRLANGTMRHIDGQWYEDYTNIRSAFDAEVKGVGRVDIITLYSSDPNKNATEYFHVRSSKRCHQRSFKGKAFPVFDWVANAKQGSVCKHHHGGPGTSWVSTGTMPHPTVTLCASNDGTLPFWIDLKWQTGEQRFADFFSYTPGAPDPKHFVLPPACH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029652: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3_20-13C (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences