3300029647: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37304R1

Overview

Basic Information

• IMG/M Taxon OID: 3300029647
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283839 | Ga0245203
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37304R1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 76077790
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047755	Metagenome	149	Y
F056682	Metagenome	137	Y
F068856	Metagenome	124	N
F078822	Metagenome	116	N
F087213	Metagenome	110	N
F101192	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245203_100573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	22217
Ga0245203_100973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10059
Ga0245203_105312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1579
Ga0245203_106901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1255
Ga0245203_109377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → environmental samples → Faecalibacterium sp. CAG:74	960
Ga0245203_116857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	589

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245203_100573	Ga0245203_10057317	F047755	MENEKVKYLINMINYMDIKDKLRLAICISQSKWSGLIYNTKGNYEKFDAMLKEIDEEYRTKLINFAEYKIVMFAMAKLMEIETTEQNKVALYLFNLLSK
Ga0245203_100973	Ga0245203_1009731	F078822	AFLKAFHPHAVRFPAAFLLVHRFYLALEELLSCATAYL
Ga0245203_105312	Ga0245203_1053124	F056682	VKTQSRAGKVANQPIRQGEIYSASFGAFPSKNRITFPIQELGKIHENQEIL
Ga0245203_106901	Ga0245203_1069012	F068856	MKRLTSILLALLMLVGMALAEETPDAALGDWYALNTENEAICLTLREDGTFCYDSREGTWRKTTDDEYWLTYNIHDLPEVMERMVNSQAAEQDLTALLTETGLDVYYGSTAKGVVAHMVRDAEELQNVRTPKTDTPLEAFAGTWTMETVFAGAMEMTYTLDKGERLEFCTIDGLTMLPGAALGNFTEGTSYPMTLEDGKLHTTILMQMTEEETLDFDMTFFQTADGSLYATLQLSDVPDNPTTMFLLVPMEKE
Ga0245203_109377	Ga0245203_1093772	F101192	MTYRGWLLVGIALLLTALSGTQTSLCQRMRSVTVYRGLTYWEVQQIAKAAPTSITPCGEDTIRRWVSGRYQIALRFNRYDVCLGVEEEIDG
Ga0245203_116857	Ga0245203_1168571	F087213	TVATAESTDAVSGAPLDNDIEIVYKEHFDDMVTHYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADTALDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGIEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV