3300029646: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10-13C (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029646
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128792 | Gp0224286 | Ga0206092
• Sample Name: Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10-13C (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25817522
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 33.3049
  • Long. (^o): -116.2547
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F004947	Metagenome / Metatranscriptome	417	Y
F007408	Metagenome / Metatranscriptome	351	Y
F011252	Metagenome / Metatranscriptome	293	Y
F015326	Metagenome / Metatranscriptome	255	Y
F018507	Metagenome / Metatranscriptome	234	Y
F021791	Metagenome / Metatranscriptome	217	Y
F052341	Metagenome / Metatranscriptome	142	Y
F063283	Metagenome / Metatranscriptome	129	Y
F098519	Metagenome / Metatranscriptome	103	Y
F100141	Metagenome / Metatranscriptome	102	Y
F102215	Metagenome / Metatranscriptome	101	N
F102608	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0206092_104815	Not Available	920
Ga0206092_106893	Not Available	770
Ga0206092_109437	Not Available	652
Ga0206092_109581	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	647
Ga0206092_110643	Not Available	614
Ga0206092_110657	Not Available	613
Ga0206092_111586	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea → Flabellinia → Vannellidae → Vannella → Vannella robusta	588
Ga0206092_111791	Not Available	582
Ga0206092_111882	Not Available	580
Ga0206092_113052	Not Available	552
Ga0206092_113525	All Organisms → cellular organisms → Bacteria → Acidobacteria	542
Ga0206092_114974	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Discosea	516

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0206092_104815	Ga0206092_1048151	F063283	TNTQWSGTGPLTNTNNSPSFYFYMTPPFVTADALIRIILSWGNLISNPANSLPDLDLVVAGPVDASSISTFGTGIVNFQNKDLHSTFKVLPYAKLVTDSAQGYGPEVMDFYGQPGALALGFSSSYAPGAAANAYEVWVDRPNSSPNQDSSFTFLFDTNSFIVVYQNDGTTGGNKQVLFDARTNVPYAYGFYNTDPWNKVPAEATLWHIIDLSQSAGGVVFNGFPGENSTDTTATPGAKYGYDGSFFETTKSIPCGHTASRGASPAYCPATLTYPQSKKK
Ga0206092_106893	Ga0206092_1068932	F000344	MRPKHPHAAESGVGEHTARESEAPNVCVGKERVAN
Ga0206092_108683	Ga0206092_1086831	F021791	ADYRIKPHVPPLNQIPANSVKFQYCNCTAQVEYFRVNLNYTV
Ga0206092_109437	Ga0206092_1094371	F052341	MQIMFGGKNARVMVVMMISILSFFLIQESAAIDCPKDNSQDRIYPGCNCFFEWNDANRVGNWTFEENWMQLNEPGWVAFVSIAGDNTIHLDEARRINEIYIGPNRWDTTRVVLDEDLTVEYDDVPVINSVRGYRQPTGQIRLVIQGKGFGFVSEDIVVTATQVIDNFPDNNVENQITQVYNCEYATLVYRDAQIECNIFTASLYPYSLSVTVAANGH
Ga0206092_109581	Ga0206092_1095812	F098519	MRCEEVSCAKCTVHCERPVCSIRCPKDFCEKNSCPPCETVCKPAQCHTTCSAPEPKCSPVCEELDCKNKCVKPTNCQKPKCELQCEKPQCEEPQCCSCSSSNVQIAVTRATCSTSPCFKEESQQPSLLEVFHTMQHKEQSGAEQCCPCK
Ga0206092_110643	Ga0206092_1106431	F004947	IIVIIFAIAVIALAQPAPPKEPSDFSAYGFVIEWHNDFHRRFKGDIFEDFTNHRQRIDAERHASYGGVITFFRFFDKEREYEYFGQTDMCWQAHFNNTQHPVFEWLEHAHYAGNCHGRHSQGNVKGHLFREHGSESLRREICVADNSTYTPLWIEHHHGRSGRILEFLQFKSGAPDPAVFTLPGSCTKKQEEILA
Ga0206092_110657	Ga0206092_1106571	F102608	FVVFFVSLFVSSQAQNGCQYYDSCGVCNGDDSTCCQDYLGFEPAEVDVELLKWTNQQLIGEIDQLQEHLNATRDALQDSYINEIDGGRLDLSEYIDAIHAFCAGRECSAEDCDSGRTGCGEEECKLDCECLSLSQFEFLQSAFLGAIRSVNSI
Ga0206092_111586	Ga0206092_1115861	F018507	SAVLILFLGLVAFVYTACVSPPSDLQVCVLPSTARVPQEYANTNADRQLQSYFFFLQSIKAVPTDECSLAYIDFACSQAYPRCAGDAASGLGLPVNTCYFQCSNFVEKCRGQLIGVERPDCGTFSVSPDCTAVSVKLPQDTNGASVFSASLALFSVLALVLVL
Ga0206092_111791	Ga0206092_1117911	F102215	RPMRVAIVILFCAIVAAAFAGVTERDDHISANFWDKYQEPAAHQIKTIVRRSVDQLVNARQTAAVNFTTWCFEYQQYIDQFKWGLAATDPETNTEYFHGIVEDSSTDPAVVVGYIYGYSLDNQRLVQMAVDYNDNGYMRLFSFQFNPRNERYSDAFTVFSNADTTLTPQFLGSPEYTSLTKCA
Ga0206092_111882	Ga0206092_1118821	F007408	KKEDTEKFIEGASAALWKALADEAVGLWTKIYSLNTSVESVFSSQPEDVTTPLLDLLSHIFEVQVRGFNSIRVSFTKKLKEALGETKDHDGVKAVARTALRDAIFENINILAEEHWAKTHEALTKAAKAYVIHQFTVELWPSIKSGLDDLLSFLPEELKSLGVDIAGMVLKISLILINKGVAWAMGKIGIRLE
Ga0206092_113052	Ga0206092_1130522	F100141	NFQNCSFTVGGKYYDLSSLQAQGQFNFDQAIYQQDVTDLYVDATNAATNFHWELQVCGNVKSNYASCTTPSPVNQISSSGTTCTALGDLRSAAIDITPGQDGLMMTFYHGLAVSHIQEYSTRLYLLCDPSGAASIPHVEHLKSFYAWHIYLTTKLTC
Ga0206092_113525	Ga0206092_1135251	F011252	SCRSGRNFLSQYSFIEPNAAFPLPPTFNFDEYIETEQELWALFPETDGRRVNFVQIGLTAMIYAEAPDRGAELGPDETYILMPCADYTMRPIRMRACRRLTLSEYRMGHLTAIKLVGKVNEAGDVMREIGCQILGEEVIQEAQARLADYGDDQ
Ga0206092_114974	Ga0206092_1149741	F015326	CYCDWGEHGGDWCMCLGFFSGNMECCEPCCGKPCNTNDGVYCCLSWFPGCCFAGPKCLAASQNQECAFVNHGVPFLLLLIFIIPVIGILGYVVLWTIETAIRFNLRKQHGIGDTSKWDICDCCGIWFIVPGPCFACQEMRSVPKDYWDWYKAFNDKKFPAETQLEPCYTLM