3300029641: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37189R1

Overview

Basic Information

• IMG/M Taxon OID: 3300029641
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283816 | Ga0245180
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_37189R1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 75155913
• Sequencing Scaffolds: 1
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F080163	Metagenome	115	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245180_100170	Not Available	85781

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245180_100170	Ga0245180_100170114	F032312	MARIKDYDEDLSAPKLLRERARDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDGHGNYKGSSMNFDAMVCLGFTWFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVVWFIVFLYGLVS
Ga0245180_100170	Ga0245180_10017014	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILEISLKDDYYNYSNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0245180_100170	Ga0245180_10017017	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADASVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0245180_100170	Ga0245180_1001702	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINRRNIRYFYEAMQNFENSLVNEFKEKKTNFCNAKQFLESINNFDKIIFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQGFYNYTHRDLSFSTKLESQVLDSENELLQEKLDLIREEICELIGVDPNLEKQGHEDNYVFNLNVDSDNQIGFLLQATEL
Ga0245180_100170	Ga0245180_1001707	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILEFISGLDYMGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR