Sample 3300029631

Overview

Basic Information
IMG/M Taxon OID	3300029631 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0132976 \| Gp0275005 \| Ga0238865
Sample Name	Seawater microbial communities from Ross Sea, Antarctic Ocean - 124LC-38360620
Sequencing Status	Permanent Draft
Sequencing Center	Institute for Systems Biology
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	12103951
Sequencing Scaffolds	10
Novel Protein Genes	10
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S05-C113	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Seawater Microbial Communities From Ross Sea, Antarctic Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Seawater Microbial Communities From Ross Sea, Antarctic Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Southern Ocean: Ross Sea
Coordinates	Lat. (^o)	-76.4986	Long. (^o)	-179.9884	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003761	Metagenome / Metatranscriptome	470	Y
F023242	Metagenome	211	Y
F028004	Metagenome / Metatranscriptome	193	Y
F048239	Metagenome	148	N
F052205	Metagenome / Metatranscriptome	143	Y
F058456	Metagenome / Metatranscriptome	135	Y
F065121	Metagenome	128	Y
F077807	Metagenome	117	Y
F083240	Metagenome / Metatranscriptome	113	N
F101213	Metagenome / Metatranscriptome	102	Y

Family

Category

Number of Sequences

3D Structure?

F003761

Metagenome / Metatranscriptome

470

F023242

Metagenome

211

F028004

Metagenome / Metatranscriptome

193

F048239

Metagenome

148

F052205

Metagenome / Metatranscriptome

143

F058456

Metagenome / Metatranscriptome

135

F065121

Metagenome

128

F077807

Metagenome

117

F083240

Metagenome / Metatranscriptome

113

F101213

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0238865_10126	Not Available	15720	Open in IMG/M
Ga0238865_10175	Not Available	10960	Open in IMG/M
Ga0238865_10194	All Organisms → cellular organisms → Bacteria	9483	Open in IMG/M
Ga0238865_10256	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S05-C113	7247	Open in IMG/M
Ga0238865_10399	Not Available	4025	Open in IMG/M
Ga0238865_10462	All Organisms → Viruses → Predicted Viral	3384	Open in IMG/M
Ga0238865_10613	All Organisms → Viruses → Predicted Viral	2386	Open in IMG/M
Ga0238865_10692	All Organisms → Viruses	2061	Open in IMG/M
Ga0238865_11073	All Organisms → Viruses → Predicted Viral	1286	Open in IMG/M
Ga0238865_11859	Not Available	720	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0238865_10126

Not Available

15720

Open in IMG/M

Ga0238865_10175

Not Available

10960

Open in IMG/M

Ga0238865_10194

All Organisms → cellular organisms → Bacteria

9483

Open in IMG/M

Ga0238865_10256

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured phage MedDCM-OCT-S05-C113

7247

Open in IMG/M

Ga0238865_10399

Not Available

4025

Open in IMG/M

Ga0238865_10462

All Organisms → Viruses → Predicted Viral

3384

Open in IMG/M

Ga0238865_10613

All Organisms → Viruses → Predicted Viral

2386

Open in IMG/M

Ga0238865_10692

All Organisms → Viruses

2061

Open in IMG/M

Ga0238865_11073

All Organisms → Viruses → Predicted Viral

1286

Open in IMG/M

Ga0238865_11859

Not Available

720

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0238865_10126	Ga0238865_1012617	F065121	MIKTLIVLILLFNGKVVKEKLYFAKPVTILECLEFADQHMEDIATHFWVKNVMKSGYYLNDGRGTIQGFVCE
Ga0238865_10175	Ga0238865_1017525	F101213	MNYNWNEDTVDHFKFESFYESREKIEQRIKEFVELDCYIEDGESEEDLVNDLIETVYKY
Ga0238865_10194	Ga0238865_101947	F077807	MSKTGFTDWLHKEIKLQQQQRRDEMAKIIQHKGAMIVDQAQKKCILDVFNAGREVFEEFDIMHVTAWDLRQLQDLIDDMKDTFGIVPKVHKYKNDDGETIPAHFQDHVWSDDPRAYKRKD
Ga0238865_10256	Ga0238865_102563	F048239	MDDIQLKDQDIAELFNRMPEAKREAIIIAQERMIKELRDHNLELSKKNLNGVKKVKAGV
Ga0238865_10399	Ga0238865_103994	F003761	MAALVELATTDLWGHEPCWYVSEMNRPARDSKSVRRYQTITVIRNDRRVKLERDIGDARLFGEEFQLICGVPDGKGGGEAMYTVDEAIRMAQDMNLTPPPKTEVKPRDWKKIFWDNVEERNKWKKGQSIFGPNYKKERT
Ga0238865_10462	Ga0238865_104622	F058456	MNKKEILYLNASHQEVVEVLMDDVKKIMYYATEDEIAGKYQDFLNILDSVYLYSNNFHDTTLKIEGDDGVMAEFIFLIPNMLFYTAIGFITGLKTNENGEVMSIHLEKIGSLCENSTGELADVLIDATDKKRLLDDMLESETIKN
Ga0238865_10613	Ga0238865_106136	F028004	FKITNLKSKVVQYMNESEKEQFFTKNSLGNYKRENVQELDRVRYNKKLHDFAFSVGLLAVFTVLLFLMCGTLGFIDSLIF
Ga0238865_10692	Ga0238865_106922	F083240	MMHERELIHDAKKQAKRYGGETAKNDKKLIYDAKGAIHRTDMEKKGGHPLSKHWHNNR
Ga0238865_11073	Ga0238865_110733	F052205	MSLSNQDIDELFDGKPSELTYSQWLTIEGNIDFTSLTTTMKADILNRINDLSEEEAEVIITKLYNNRYEKDPQKQWLRMLKDGVFNYRDF
Ga0238865_11859	Ga0238865_118592	F023242	MKDDFRPSAAQPNPPEDKRTYTTHKEHGEDMSHENETTITSEPREDRGALDLTFLIEEHKKQIWDYKRKESEWIKTDNILQGSKKIIDELSTKLVGLARRIQELEYDNATYKKEIEKMLADKKV

Scaffold ID

Protein ID

Family

Sequence

Ga0238865_10126

Ga0238865_1012617

F065121

MIKTLIVLILLFNGKVVKEKLYFAKPVTILECLEFADQHMEDIATHFWVKNVMKSGYYLNDGRGTIQGFVCE

Ga0238865_10175

Ga0238865_1017525

F101213

MNYNWNEDTVDHFKFESFYESREKIEQRIKEFVELDCYIEDGESEEDLVNDLIETVYKY

Ga0238865_10194

Ga0238865_101947

F077807

MSKTGFTDWLHKEIKLQQQQRRDEMAKIIQHKGAMIVDQAQKKCILDVFNAGREVFEEFDIMHVTAWDLRQLQDLIDDMKDTFGIVPKVHKYKNDDGETIPAHFQDHVWSDDPRAYKRKD

Ga0238865_10256

Ga0238865_102563

F048239

MDDIQLKDQDIAELFNRMPEAKREAIIIAQERMIKELRDHNLELSKKNLNGVKKVKAGV

Ga0238865_10399

Ga0238865_103994

F003761

MAALVELATTDLWGHEPCWYVSEMNRPARDSKSVRRYQTITVIRNDRRVKLERDIGDARLFGEEFQLICGVPDGKGGGEAMYTVDEAIRMAQDMNLTPPPKTEVKPRDWKKIFWDNVEERNKWKKGQSIFGPNYKKERT

Ga0238865_10462

Ga0238865_104622

F058456

MNKKEILYLNASHQEVVEVLMDDVKKIMYYATEDEIAGKYQDFLNILDSVYLYSNNFHDTTLKIEGDDGVMAEFIFLIPNMLFYTAIGFITGLKTNENGEVMSIHLEKIGSLCENSTGELADVLIDATDKKRLLDDMLESETIKN

Ga0238865_10613

Ga0238865_106136

F028004

FKITNLKSKVVQYMNESEKEQFFTKNSLGNYKRENVQELDRVRYNKKLHDFAFSVGLLAVFTVLLFLMCGTLGFIDSLIF

Ga0238865_10692

Ga0238865_106922

F083240

MMHERELIHDAKKQAKRYGGETAKNDKKLIYDAKGAIHRTDMEKKGGHPLSKHWHNNR

Ga0238865_11073

Ga0238865_110733

F052205

MSLSNQDIDELFDGKPSELTYSQWLTIEGNIDFTSLTTTMKADILNRINDLSEEEAEVIITKLYNNRYEKDPQKQWLRMLKDGVFNYRDF

Ga0238865_11859

Ga0238865_118592

F023242

MKDDFRPSAAQPNPPEDKRTYTTHKEHGEDMSHENETTITSEPREDRGALDLTFLIEEHKKQIWDYKRKESEWIKTDNILQGSKKIIDELSTKLVGLARRIQELEYDNATYKKEIEKMLADKKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029631: Seawater microbial communities from Ross Sea, Antarctic Ocean - 124LC-38360620

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences