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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029627 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321343 | Ga0307356 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ile1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 47673476 |
| Sequencing Scaffolds | 23 |
| Novel Protein Genes | 25 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 4 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 2 |
| Not Available | 11 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F021795 | Metagenome / Metatranscriptome | 217 | Y |
| F024821 | Metagenome / Metatranscriptome | 204 | Y |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F041847 | Metagenome / Metatranscriptome | 159 | Y |
| F042959 | Metagenome / Metatranscriptome | 157 | N |
| F045836 | Metagenome / Metatranscriptome | 152 | Y |
| F049070 | Metagenome / Metatranscriptome | 147 | Y |
| F055749 | Metagenome / Metatranscriptome | 138 | N |
| F059033 | Metagenome / Metatranscriptome | 134 | N |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F070166 | Metatranscriptome | 123 | N |
| F071272 | Metagenome / Metatranscriptome | 122 | N |
| F072475 | Metagenome / Metatranscriptome | 121 | N |
| F078767 | Metagenome / Metatranscriptome | 116 | N |
| F094051 | Metagenome / Metatranscriptome | 106 | N |
| F103316 | Metagenome / Metatranscriptome | 101 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307356_103333 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae | 1816 | Open in IMG/M |
| Ga0307356_106513 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1296 | Open in IMG/M |
| Ga0307356_107487 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1200 | Open in IMG/M |
| Ga0307356_107838 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 1172 | Open in IMG/M |
| Ga0307356_109469 | Not Available | 1051 | Open in IMG/M |
| Ga0307356_110602 | All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | 985 | Open in IMG/M |
| Ga0307356_112881 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 877 | Open in IMG/M |
| Ga0307356_113315 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin211 | 860 | Open in IMG/M |
| Ga0307356_113951 | Not Available | 837 | Open in IMG/M |
| Ga0307356_114117 | Not Available | 831 | Open in IMG/M |
| Ga0307356_114391 | Not Available | 822 | Open in IMG/M |
| Ga0307356_114775 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 808 | Open in IMG/M |
| Ga0307356_115276 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin016 | 793 | Open in IMG/M |
| Ga0307356_116485 | Not Available | 755 | Open in IMG/M |
| Ga0307356_116529 | Not Available | 754 | Open in IMG/M |
| Ga0307356_116708 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 749 | Open in IMG/M |
| Ga0307356_117097 | Not Available | 737 | Open in IMG/M |
| Ga0307356_117950 | Not Available | 714 | Open in IMG/M |
| Ga0307356_122654 | Not Available | 617 | Open in IMG/M |
| Ga0307356_123300 | Not Available | 607 | Open in IMG/M |
| Ga0307356_125680 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 572 | Open in IMG/M |
| Ga0307356_126656 | Not Available | 559 | Open in IMG/M |
| Ga0307356_131650 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307356_103333 | Ga0307356_1033332 | F024821 | RNSMESSTRERYLRTLMRYQEQHGREKASAIQERFWKDRERVVSESAEEIDWFPSWKKNQVLESLLEKTYRDLIREMELEGLP |
| Ga0307356_106513 | Ga0307356_1065131 | F042959 | MARRKQPAGRIDLKGLDASEIRVRLKEVGPVAEIRLTRANLPLFEEDEFELSLAWGGQRKTYKIPVREGKPLFGALPDSVTGLVERKPQKGAGNLIRELTLAGAAGEATFPMSWGYAIPEEWKPLERVYNGVIEMARRLSGWQVF |
| Ga0307356_107487 | Ga0307356_1074873 | F045836 | MESPNLVTALAYYTVSAFLDPIQWLICGICGWSAERLDQAVIAAAGLVAVLFVVLTWFYPDGKLFSFPTPHAGFAILGKAIGAVLMTGLIHWLKKRQLSRNTGT |
| Ga0307356_107838 | Ga0307356_1078381 | F094051 | GILGKVQIEGNWTQKRLILPVIQAALERTSLASPAIGPTMTYAKLKGTIPLLGPVPVQSQLDEFEHAVGGGGKPSGFDIEVLKDRVVLYVSDEAEIESDVGNPMSLQQQAAAGALAANLNKLIAERLNTTPQVYGTGGDLGNWTSVKPTLAVGKMAAAMGVHRPTALVMGTLAGAYYVDAVGDKVAIANLTEWRGAVSIHPTLNIPVFISTDVDKLDDTSGNRYVFGVCNTTPGVVTVLSKIKARQYDDPKLGAQVYQYDIWRSPFSNIQQTSGKNLGVMRGFMKES |
| Ga0307356_109469 | Ga0307356_1094691 | F062800 | NRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV |
| Ga0307356_110602 | Ga0307356_1106021 | F055749 | NVFGNNNPMNLIIVIAIGILTLIAVFSVIPVVGGLIDNAMPTLDEGSEWNVITNPDLPSGASMWTQLGPLLVLAVLAMVIGLVIMYFRNAAG |
| Ga0307356_112881 | Ga0307356_1128813 | F072475 | MSESFASRFMTPEEKQAMVARDPQSAQALHNGPRTGFAHNCYAGGLGMFFQKTIKNTILEKFLDQAWQGFLKYRCAGSKAAYREAKKNPDAVFQYDDPLLACLNHVLKESISKHHTDADARRKQALMRQATDITLTLLNEDIYYRARCKEHLRDILAAVAEHPEYLDLSLEEEQNIRRWNGCSP |
| Ga0307356_113315 | Ga0307356_1133151 | F031111 | KKEKSRFLIGKKRCISNIPQNSYYQTIVNIPAAYNFSCYYPQNLPSSQIGKQVKEILKPLNLALIKLSKPKLTFS |
| Ga0307356_113951 | Ga0307356_1139511 | F103316 | RIIGLIAAFAVAFFTLPTLTPSPDHISVETKTKTQVTTQELQKSPDQSSNETLNQADQMTDLKTLIADLDQQVKQANDLTEAINLIISGLLALLSYLIGDKLTAWLQKLFIKKRYKV |
| Ga0307356_114117 | Ga0307356_1141171 | F078767 | MTNQITDITDEILAALREAGCRTVGILPEVLMFSGNNNPFGFILLNSETTENDNGGILTQLLDISIFIITQNGINKMKEHCNVLYAAIGEILNSSGLNSKTALVNLETINW |
| Ga0307356_114117 | Ga0307356_1141172 | F067770 | MIEFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRNGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSVEVQANAAILYYADQNRARVALLHQTGGYHLPKREHFGFNKTDGNKYLEKIAKLQTVKNKKANK |
| Ga0307356_114391 | Ga0307356_1143911 | F059033 | MAITTSNLQALAAAWDVGTEFEPIVIDMLRISSFLRTAVAAKASHGIKHEYRFFKSLPLAVFREIGEGIVPQKIGPDKAQIDLKELVFDLYEDYQGILQYPGGKEGWLKDYYPIALMALTNAITQSSFYGNIPGFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWEKFDGASLRFNNTELLNVIDMTPNQPIPIVTDTTTNKQMNIFKWI |
| Ga0307356_114775 | Ga0307356_1147751 | F041847 | EDSMDGKQDLRFGELVVDFANAPTPEEAGFAFVRGAAKAFGYGSKFLRNALDRYPTLKRFEGALQADDRELVGLLLEERRLLSVINNLPCNIVLASYECDQARVLLFRVQPLEPKWDCENPYEEDEVRIAVGAEGKAWLDEVAEMFDDRAPLAQEMDEVKERLPDCLEAYVGLGDRILSIRRSIPPEKAHEAQKWAAYYSRIEAEQEVLAELLERWRKVLGEIVRAEDLPRNQALLDLLAVYNVVNRRELAVGEDGTLFEKPLFEERYF |
| Ga0307356_115276 | Ga0307356_1152761 | F020363 | LVMRCRVMRLVVNSRVGKNRDTRRESPAGAGAGRTADHLTILFSQKVLAVRKGNDLYRPVMGRYFFMIL |
| Ga0307356_116485 | Ga0307356_1164851 | F025291 | AWRVITYNYHLGDNSSTGLYTLNVGADQRYMTFQTLLTTDEFLNMAIVYNDFKIHKAVFTSLPTSNSNRLPYLYVDIEPTTSAGVNPNNVRTCADDSARIFAPKALAPQSCEWNLQGIGPNFNIWLDTGSTIPGQFQIGNYIFGSIPINLGWEVKFQLVCEFTNPK |
| Ga0307356_116529 | Ga0307356_1165291 | F070166 | KIAYEKDFSQIELAALFHNQLWLQTKCQTDKHFKEKFGKSLEELTKILKECNFSRGLQPSAIKSVRTKVLAQEWDFLFPQRNLPNLEAQLRNSIYTKWRKPQGVEISKLPPKKHIGKGYRDHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTYKEIISRIKRTIQVKEAIKRIDPNWRNTQIAEASGGNIPKKVG |
| Ga0307356_116708 | Ga0307356_1167082 | F021795 | MKKEADRVRRWREKKKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAVIMEKALTSLKRQAYTPPVLRHFPRREEALARAAASPLPPAAPPAGGGGHEGNRQPRILIDDLANYPSLEDIEREQAAKEQSGIYD |
| Ga0307356_117097 | Ga0307356_1170971 | F071272 | MLKETEAKARVYKAAVDQLADSMAAGAWQDGPAPKDGSWILGLFHGLPYVVVYDSWEVGGEMLPDGTGSPPDGHESGWCLAGDSLQVMDKDEPEKWARIIHPDRHMPASWDGPED |
| Ga0307356_117950 | Ga0307356_1179501 | F025291 | KQPNQRRGGYKPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307356_122654 | Ga0307356_1226541 | F025291 | SSTGLYTLNVGADQRYMSFQTLLTTDEFQNMAVVYNDFRIHKAVFTSLPTSNSNRLPYLYVDIEPTTTAGVNPNNVRVCADDSARIFAPKALSAQSCEWNLRGIGTNFNIWMDTGATIPGQFQIGNYIFGSIPMNLGWEVKFQLVIEFTNPK |
| Ga0307356_123300 | Ga0307356_1233001 | F070165 | VSASNLGLIGIATVSPARPCRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFQLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307356_125680 | Ga0307356_1256801 | F070158 | QKMADATYYQEGATGLGKLDASSEKPSTEASSPSDAAPEANGNEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPNDFVNVEVRKIMKRTGVYLEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPP |
| Ga0307356_126290 | Ga0307356_1262902 | F070165 | CRPVHVKVTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSDLNVSIKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV |
| Ga0307356_126656 | Ga0307356_1266561 | F070165 | MVRMKRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSV |
| Ga0307356_131650 | Ga0307356_1316501 | F049070 | TANRFADVLEAEVKMRRNPLAARVVSWFNLCRVCQDLEEQMLLAPQPGEDDSQLHRALLSTAIASGEGLLLECDDAETLKPLRLTPPALAAKVESLRVTFTQWHTELKPERQAAILKEAFRGTV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |