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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029626 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321317 | Ga0307330 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Ser1 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 35745339 |
| Sequencing Scaffolds | 21 |
| Novel Protein Genes | 22 |
| Associated Families | 20 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 14 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 2 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Eubacteriales Family XII. Incertae Sedis → Acidaminobacter | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012026 | Metagenome / Metatranscriptome | 284 | Y |
| F020363 | Metagenome / Metatranscriptome | 224 | Y |
| F020914 | Metagenome / Metatranscriptome | 221 | N |
| F022683 | Metagenome / Metatranscriptome | 213 | N |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F028541 | Metagenome / Metatranscriptome | 191 | Y |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F035785 | Metagenome / Metatranscriptome | 171 | Y |
| F051952 | Metatranscriptome | 143 | N |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F064746 | Metagenome / Metatranscriptome | 128 | N |
| F067770 | Metagenome / Metatranscriptome | 125 | N |
| F067893 | Metagenome / Metatranscriptome | 125 | Y |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F070167 | Metagenome / Metatranscriptome | 123 | N |
| F078767 | Metagenome / Metatranscriptome | 116 | N |
| F082734 | Metagenome / Metatranscriptome | 113 | N |
| F093911 | Metagenome / Metatranscriptome | 106 | N |
| F095527 | Metagenome / Metatranscriptome | 105 | N |
| F099361 | Metagenome / Metatranscriptome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307330_101937 | Not Available | 1923 | Open in IMG/M |
| Ga0307330_104273 | Not Available | 1335 | Open in IMG/M |
| Ga0307330_106100 | Not Available | 1107 | Open in IMG/M |
| Ga0307330_106864 | Not Available | 1038 | Open in IMG/M |
| Ga0307330_107483 | Not Available | 989 | Open in IMG/M |
| Ga0307330_107632 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin217 | 978 | Open in IMG/M |
| Ga0307330_107725 | All Organisms → cellular organisms → Archaea → Euryarchaeota | 971 | Open in IMG/M |
| Ga0307330_109437 | Not Available | 863 | Open in IMG/M |
| Ga0307330_109879 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 841 | Open in IMG/M |
| Ga0307330_110137 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 830 | Open in IMG/M |
| Ga0307330_110265 | Not Available | 824 | Open in IMG/M |
| Ga0307330_110546 | Not Available | 812 | Open in IMG/M |
| Ga0307330_112661 | Not Available | 729 | Open in IMG/M |
| Ga0307330_113536 | Not Available | 703 | Open in IMG/M |
| Ga0307330_113677 | Not Available | 699 | Open in IMG/M |
| Ga0307330_115071 | Not Available | 660 | Open in IMG/M |
| Ga0307330_115376 | Not Available | 651 | Open in IMG/M |
| Ga0307330_117149 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp. | 609 | Open in IMG/M |
| Ga0307330_118166 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Eubacteriales Family XII. Incertae Sedis → Acidaminobacter | 589 | Open in IMG/M |
| Ga0307330_120365 | All Organisms → cellular organisms → Bacteria | 548 | Open in IMG/M |
| Ga0307330_123682 | Not Available | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307330_101893 | Ga0307330_1018932 | F020914 | MAIYQKYGFAIDQILSEDQALPNAKPGDSTNTIKLDAVADDGLHIVVCAASTTVELASDATLEIRPTVGATDGAVTTVLPSILIKQGVQSDASWLPGEMICQFNIPAKLIGSARYLKLTYVTSANESDDKVEAFSVRR |
| Ga0307330_101937 | Ga0307330_1019371 | F070165 | LLGFTTDFQESEDPRYSKKILMVRMRRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307330_104273 | Ga0307330_1042731 | F099361 | NIKNTDSISFLIANSGNQKIYHPVSEFKADILADVEADETLQTIISDKVLADVETDETLQDIIIQGVLGKLAAPVLATESTIIENSNDPTITIEITKNTFADTVSEDVDNWIIDFGMTTLAFYSISKVSATEMMITTTGTAKVGTIRILALKDCFDAPIVDSTVLEIEVQESGE |
| Ga0307330_106100 | Ga0307330_1061002 | F067770 | MIEFKYNSPVFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGGRYLERIAKLQTEKNKKANK |
| Ga0307330_106864 | Ga0307330_1068641 | F051952 | NSWRILGKVTENEVTLVRYFLSKLVYTDEVVTLEETCILFLSFEKMVQKMSQHEAYRAKYGSEVFTFRAVFTSLEDVVSANPQDRLIRMREVYGFYRGKLFSRRYYFSVRGQLTRELRLKVLTRFPKKFPPKAFVGKGYGDHGTAKEMAYDGSPSWQEVAMADTNLGTSDTSRFDYLEFLFRNFNTSRVQLFPQKKPGEKLHSSSN |
| Ga0307330_107483 | Ga0307330_1074831 | F062800 | FSTVTNRRKGKKGKGSKGKRRTNQLQAVSSGAIARPFPATFRVRQTFSNGETFTSSSKVVRGLSEFLAKPPMYYNYMYGIYKYARVLAVELEVLWNSTGTDSMRVAIGRVPYSDISGITYSQFSEMPETQIALLSAKGGMDKVVQTRTFVARNAIGQALTDHSYWVNSAQAISTTPLHTDDYALLIMSDGVTLASTASATIRVHYHIEWFDLQYAV |
| Ga0307330_107632 | Ga0307330_1076321 | F093911 | RVLGDFMRLYDAYKNGEITRTEYLAYLDFGYKPSDSVFLTQNKSTEMVTISYLSMENNYNWSIDDGESMMAYVGPINDLSNAGSLNNAGSILFLYKDGKIVNTGTITNTGHIALQSI |
| Ga0307330_107725 | Ga0307330_1077252 | F095527 | RISMLILIPALLLTTIPISILSEDHNTATISAILYLEKIDPENPYLHLAKDTTTSNPKMSLNFALKGIIESNKGQKEENLNKVLEIMSSLKLIPEDRKDMFNVLIFEYNLTRSQKYIEDLSKSSNLRYAANSSEYLRQANEDLNISAGSGLEETEAKLKKISETYVNKLSNYSSLYKEMALMSYDEKRYLATTLFSIYAKNDNQPLNESLDLILSRFENKWDSFFGTDAFNDSTFSPDSLKELQIKAIKYEGEGRTDFADVISDYIKFQAISYTEFINAIEEGGL |
| Ga0307330_109437 | Ga0307330_1094371 | F070167 | MSWLGNALFGQSRLKGYDMTPQQLIQAYTPKTYSVDTSRYTALGKEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQN |
| Ga0307330_109879 | Ga0307330_1098791 | F028541 | MNEQERLKLINRLKTARTSEERDQILWYLAGQDKAARGKVQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA |
| Ga0307330_110137 | Ga0307330_1101371 | F022683 | MASEMADQMKPLTEFYAKWSKDALEMMSKGLGMYDKMIRAWTEVGGQAQAEQPEDTIKKWADAFGGSYKDLFEMYTQPFKMFGAAGEIPGKEAWQDAFSKWQKMFTAMPSGSTPTSGDEFMNFSKHWFEGYSKVWQAWMESMQTMGEACKAAVSEGENPDAAMGAFTEISDKFMQQWAAFVTAQAQAFFSLWRSRLPDEKTEPKRPKKA |
| Ga0307330_110265 | Ga0307330_1102651 | F025291 | KQPNQRRGGYKPSTKTKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNYNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307330_110546 | Ga0307330_1105462 | F020363 | VARVFALVVRCRVMMLFVYSRVGKNRDTRRESPAAAGAGRGASHEAFLFSYPIVAPRSANDIYRPVRDSSGFIFI |
| Ga0307330_112661 | Ga0307330_1126611 | F062800 | SGAIARPMPAKFRVRMTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307330_113536 | Ga0307330_1135361 | F082734 | AKKRGISYSYWKDIHYSQETAEKVPFFVLSDDGIVVPIYSISFIRSGIVLRSAFGEFHLPNSGSRYYHDRAKMLVLTENRSQTEDYINYKSTPGALLRGAVVRMAANGLDVGEIVKILCVSPKSQRATKIKQFYKSEECTRMVREEVRKILENCGVTEEAVVKMLLEAREVALEKKDAANMLRAAENFVDMYGMKEKDRQIDTRTFEVESEVEDLKKLEKVSDRLKLTQKEEKD |
| Ga0307330_113677 | Ga0307330_1136772 | F067893 | SFSPEYPMQTVYPRYTMAERLVLAVIAVVTWPVERFLGWVRRKVAIDMAPSADHR |
| Ga0307330_115071 | Ga0307330_1150711 | F078767 | MTNQITDITDEILTALREAGCRTVGILPEVLIFSGNNNPFGFILLNSETTENDNGGILTQLLDISIFIITQNGINKTKEHCNVLYAAIGKILNSSGLNSKTALVNLEAINWHADMPFVTQLVGDLDIISSINFNIK |
| Ga0307330_115376 | Ga0307330_1153761 | F035785 | EDTKMETKKIEAETAAKMSENELMDAVWEAPENSVLEIFAADPDNQSGDNDGVYLEVVKLDDEESVVRDRWPNLDGTRHIVSTSDIYAIYRALVDQVEEVA |
| Ga0307330_117149 | Ga0307330_1171491 | F064746 | VFAIGGMSSTNGNDSAKNVTIDGYTFEGDFDDKWTNGYGDTETYKPANLEDIQFGIPDGAYDWTGAENYNAFRYRSGEPSGSITKYGWAHIFVLKPDDDLSYSSSIEMLRHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVQGELITSEDYPAFINDNSQGAIAFFLDDGKVCVIDAFTTNNFGMSAWDIIDSITV |
| Ga0307330_118166 | Ga0307330_1181661 | F031111 | MNNQVLFSIFKNKTRRKKEKSRFLIGKKRCISYIPQNSYYQTIVNIPAAYNFCCYYPQNLLSSQIGKQVKEILKPLSLALIKLFKPQLTL |
| Ga0307330_120365 | Ga0307330_1203651 | F012026 | MNLKEAQAQTAALISKRAEAINILHRLEKVEDRYNPKIIAEINGYKQEVEELSRELDRLEVEKGALLEAEEAARKEYITALAAYDELYGRFPNPEKEAAELLKRYAKHVEAARRAREILMEKITALAAVSGAYLPIPPQIGHAWREYAREYAFEIEHRGGD |
| Ga0307330_123682 | Ga0307330_1236821 | F020363 | RRVAVARVFALVVRCRVIRLLVYSRVGKNRYTRRESPAAAGAGRTADHLTVLFSQKILAVRKANDIYRPVVHSCF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |