3300029609: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36439

Overview

Basic Information

• IMG/M Taxon OID: 3300029609
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283784 | Ga0245148
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36439
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 215490466
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F029444	Metagenome	188	Y
F042910	Metagenome	157	N
F056682	Metagenome	137	Y
F081354	Metagenome	114	Y
F084124	Metagenome	112	Y
F090513	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245148_100021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	274657
Ga0245148_100075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	167216
Ga0245148_100197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	95754
Ga0245148_100334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	72978
Ga0245148_100608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	47210
Ga0245148_101318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	24463
Ga0245148_107162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	4964
Ga0245148_116863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium D5	1886
Ga0245148_148952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	553

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245148_100021	Ga0245148_10002127	F084124	LNATANAFARATKGNKHHFNSQRNALTMFLAFLFIMAVACFVKLSASTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0245148_100075	Ga0245148_10007511	F084124	LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNILSFSTQTAWLFVPKKLLYWKILWALPKPAIFEKIE
Ga0245148_100197	Ga0245148_10019786	F029444	MEVSEQLTGFEPEDLMSWTVSNLQRPFREDFSLKISGIIAEKESQIFGCRFVGFDRPKKAAPFFNF
Ga0245148_100334	Ga0245148_10033431	F013656	MEKKIYKEANNFETETNINVLYKEQIISVYTNKVDLQRKLNKVLGKPTREYKIKRSISGSVWEIPFTDKVKIRNLILKCNIFEL
Ga0245148_100608	Ga0245148_1006085	F056682	MKTQSRAGKAANQPIRQGEIYPASFGAFPSKNRSTFPIQKLGKIYENQEVL
Ga0245148_101318	Ga0245148_1013186	F081354	VKDFSLIFLKFSRRSPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR
Ga0245148_107162	Ga0245148_1071625	F090513	MLKIFAMAKYVRKMEWKLLHIKHILYMRPFGALKIAPQSVGNKNGTKAVLQGWAAAFVPYMLSFTY
Ga0245148_116863	Ga0245148_1168633	F056682	VKMQSRAEKVANQPIGQGEIYSASFGAFLSKNRSTFPIQELRKNRENQEVL
Ga0245148_148952	Ga0245148_1489521	F042910	LHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTISAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEASAAAFVSGRCKGR