3300029604: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36243

Overview

Basic Information

• IMG/M Taxon OID: 3300029604
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283783 | Ga0245147
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36243
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 205752412
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F055775	Metagenome	138	N
F056682	Metagenome	137	Y
F068941	Metagenome	124	N
F073656	Metagenome	120	N
F078822	Metagenome	116	N
F087335	Metagenome	110	N
F090514	Metagenome	108	N
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245147_100225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	99054
Ga0245147_100780	Not Available	42769
Ga0245147_101227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	28174
Ga0245147_102154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	16278
Ga0245147_102592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	13401
Ga0245147_102825	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	12195
Ga0245147_104148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	7702
Ga0245147_104607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6766
Ga0245147_107446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3811
Ga0245147_120041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1264

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245147_100225	Ga0245147_10022566	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVPPRLTGANWFVILLTIVPTGSRTRAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG
Ga0245147_100780	Ga0245147_10078026	F055775	MAQIAQQDNLVIEVATTAAKLDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINAYSKAVEAIALN
Ga0245147_101227	Ga0245147_10122721	F099269	MRKPPFFVHGVLLSVQVGELLLLDDLGDRAGGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV
Ga0245147_102154	Ga0245147_1021545	F042936	MERGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQKGALTPPYLEKLYFRSRLRGK
Ga0245147_102592	Ga0245147_1025921	F078822	LYQRSYFLSSTFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0245147_102825	Ga0245147_10282510	F073656	MEQDQEQMQGALYVAVDDGNKIIAMERSRRSDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRCCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWAFVNPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEGRAAKREEQYNLAAYILDRKFPIRRRPSSEIPPMQAEGIHTFRNFDAINLLFRPDKLLEAYQRRRDEPVRGAEFHLKRH
Ga0245147_104148	Ga0245147_1041486	F087335	MLELYFNDGNLLPENREEEQYAEATLNNILAGKTANTEMCIWPCFYHAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD
Ga0245147_104607	Ga0245147_10460710	F068941	MDNKKFIIGVALLLLLMLGGTYAYYKWSSSDNMNVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMDLTTMPDELKEKSFEYEIYYNSSTLVKKGNFGVYNSNTNTSGIAYATSGVTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSF
Ga0245147_107446	Ga0245147_1074466	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFIYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG
Ga0245147_120041	Ga0245147_1200413	F056682	KIWSRAGKVANHPIGQGKMYSASFGAFPSKNHSTFPIQELGKIHENQEVL