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Sample 3300029602
3300029602: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Trp1 (Metagenome Metatranscriptome)
Overview
Basic Information
IMG/M Taxon OID 3300029602 Open in IMG/M GOLD Reference Gs0116197 | Gp0321357 | Ga0307370 Sample Name Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Trp1 (Metagenome Metatranscriptome) Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 73215721 Sequencing Scaffolds 3 Novel Protein Genes 4 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon 1 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations Type Engineered Taxonomy Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
Location Information
Location USA: Wisconsin Coordinates Lat. (o ) 44.11 Long. (o ) -88.23 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F082739 Metagenome / Metatranscriptome 113 N F092888 Metagenome / Metatranscriptome 107 Y F105254 Metagenome / Metatranscriptome 100 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0307370_124051 All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon 779 Open in IMG/M Ga0307370_124553 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon 766 Open in IMG/M Ga0307370_129554 All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon 666 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0307370_124051 Ga0307370_1240512 F092888 MPGPASARGNYGMQPRNNKTIPTTSEGSQVHEQGKLEQNQNLFTLRVRKASGTIEFLSIGVCFTVVSIILIQAMATGQTAWNHAAFEPASSLVLAVVGYAGFMTSWKETSIAVDGLARRFTATTRNLLTRSSHEHEVPLPGIQAMDTEVDERTNTVRVTISRDNRETIRFQLDCNSYGPLEKYLKALLPKIPIITRD Ga0307370_124553 Ga0307370_1245531 F082739 SAAIIGISAAEIQKDFRYTDVDFTPVDTNGTEDISDDLLLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTASSFTVTDTFGPQFNIHPAKLCGGVDIIRVDAGGYVTELSGTDQVVSAAVDNDANTVSLEIALDEPLATDEELMIYLKFQTALKKMLPDSNTFVNEATVNGETANATIEFV Ga0307370_129554 Ga0307370_1295541 F082739 GYEIQGDTNMRKLLCILLVISAAIIGISAAEIQKDFRYTDVNFTPIDTNGTEDISDDILLPAVLGDLLPDGDGDGFFDVSYVLKKNGMVASTNPGQLYGVITVNNTTATTFTVTDAFGPQFNIHPAKLCGGVDIIRVDAGGYATELSGTDQVVSAAVDNDANTVSLEIALDEPLATDEELMIYLKFQTALKKMLPDTNPFVNEATVNGEPANATVEFV Ga0307370_139776 Ga0307370_1397761 F105254 KKLMAEVATIYRLYGAAGTKYSLAGKTGRFCTQDSDPGLNNPCKIPPQGETYYSYRTTDCIGITGDFNQVRDIYIHCDGNFASEWGLDSGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQATGTPGTTGHSIDDPTNGHPYYKDDPEKVRDFDTCLANSPLLIDSGPYTDDFYSKA
