3300029601: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Trp2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029601
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321358 | Ga0307371
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Trp2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 69258506
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036991	Metagenome / Metatranscriptome	169	Y
F048337	Metagenome / Metatranscriptome	148	N
F048390	Metagenome / Metatranscriptome	148	Y
F059033	Metagenome / Metatranscriptome	134	N
F070158	Metagenome / Metatranscriptome	123	N
F077342	Metagenome / Metatranscriptome	117	N
F082739	Metagenome / Metatranscriptome	113	N
F097412	Metagenome / Metatranscriptome	104	N
F105254	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307371_117273	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	946
Ga0307371_123459	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104	766
Ga0307371_128609	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	666
Ga0307371_130851	Not Available	631
Ga0307371_134964	Not Available	577
Ga0307371_137219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	552
Ga0307371_138260	Not Available	541
Ga0307371_139224	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin003	532
Ga0307371_140728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307371_117273	Ga0307371_1172731	F097412	WKPQPGKINKVRILKDPIRREADQKFNRPSYQFAVTGDDPKVPLVWSVSAKGALQQIIGIMKANGLTTLVGGVLQVAVAGDGTERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0307371_123459	Ga0307371_1234591	F070158	AQNMADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAEKAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTLAQGGTANNLASIEQQYRNEIELISTGKHPSIRRGNAQAIADMKAEYRKKGLSVY
Ga0307371_128609	Ga0307371_1286091	F082739	MRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPVDTNGTEDISDDLLLPAVLGDLLPDGDGNGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTASSFTVTDTFGPQFNIHPAKLCGGVDIIRVDADGYATELSGTDQVVSATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALKKMLPDIATFVNEATVNGETANATVEFV
Ga0307371_130851	Ga0307371_1308511	F048390	RTLQHRVTPHGRDFYALSIPPQVAEALNLKAGGSVDIIVSPVKKSMFEVTLNPTPVELSQSLKEV
Ga0307371_134964	Ga0307371_1349641	F059033	LQTLAAAWGVGNEYQPIVVDLLKRSSLLQTATVAKASHGIKHKFRYFNSLPTAAFREIGEGIVPQKVDVNTAQIDLKELVFDLFDDYQAILQYPGGKEGWLKDNYTAALAALTNALAKAVFYGNVPSFGYEKAFKGFHQYAKDLGQVIAQKGATTAYRSSIFAVRWDEFDGASLRFNNTELLQVIDMTPNQP
Ga0307371_137219	Ga0307371_1372192	F036991	MAVSVTRKLSGIVAHNLSGLDSHRMEVTDEMDRDATGDPEDAI
Ga0307371_138260	Ga0307371_1382601	F097412	AWTQEPNARRKKMSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKLPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0307371_139179	Ga0307371_1391791	F105254	LERGKKLMAEVATIYRLYGAGGTKYSLAGKTGRFCTQDSDPGLNNPCKIPPQGETYYSYRTTDCIGITGDFNQVRDIYIHCDGNFASEWGLDSGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQATGTPGTTGHSIDDPTNGHPYYKDDPEKVRDFDTCLANSPLLIDSGPYTDDF
Ga0307371_139224	Ga0307371_1392241	F077342	AGVDLTDSNVAVLLHCVLANEQERDFIVFSKGSIDQVFDINMQYFLLYSPTYCRNIGNGIFIVSLPFWRMQHIAESENSDIVSAEFEVIIYGFNTLEYPNGEDKGAASFQCIVIDTGTINFTKNRFPLPLTSVVDEPAEEQRREILNPKRIF
Ga0307371_140728	Ga0307371_1407281	F048337	QPDLQEKPTQNLPRREPNIRTASLFAINLPGNAVLCSKQARSTIMARKENNKMIEKQVTFEGILREDEEQSNETARLQDYRIAAITKDATYVLIDALPYDFIVTNAFYRITEAFDGTIDLGTKVAPGRIIADADFVKTVAKRSVAKSIQLDAGKPIQLVLGPGTTGKIEVHV