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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029600 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116197 | Gp0321348 | Ga0307361 |
| Sample Name | Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Val2 (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 53497085 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 21 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 4 |
| All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Type | Engineered |
| Taxonomy | Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 44.11 | Long. (o) | -88.23 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015738 | Metagenome / Metatranscriptome | 252 | Y |
| F015885 | Metagenome / Metatranscriptome | 251 | Y |
| F018726 | Metagenome / Metatranscriptome | 233 | Y |
| F021795 | Metagenome / Metatranscriptome | 217 | Y |
| F025291 | Metagenome / Metatranscriptome | 202 | N |
| F028541 | Metagenome / Metatranscriptome | 191 | Y |
| F029768 | Metagenome / Metatranscriptome | 187 | N |
| F031111 | Metagenome / Metatranscriptome | 183 | N |
| F041847 | Metagenome / Metatranscriptome | 159 | Y |
| F051235 | Metagenome / Metatranscriptome | 144 | Y |
| F055836 | Metagenome / Metatranscriptome | 138 | Y |
| F059998 | Metagenome / Metatranscriptome | 133 | Y |
| F062800 | Metagenome / Metatranscriptome | 130 | N |
| F064732 | Metagenome / Metatranscriptome | 128 | Y |
| F070158 | Metagenome / Metatranscriptome | 123 | N |
| F070165 | Metagenome / Metatranscriptome | 123 | N |
| F070166 | Metatranscriptome | 123 | N |
| F070167 | Metagenome / Metatranscriptome | 123 | N |
| F071272 | Metagenome / Metatranscriptome | 122 | N |
| F074913 | Metagenome / Metatranscriptome | 119 | Y |
| F092121 | Metagenome / Metatranscriptome | 107 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0307361_101295 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 3267 | Open in IMG/M |
| Ga0307361_103068 | All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes | 2033 | Open in IMG/M |
| Ga0307361_103078 | All Organisms → cellular organisms → Bacteria | 2029 | Open in IMG/M |
| Ga0307361_108180 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1181 | Open in IMG/M |
| Ga0307361_109340 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 1093 | Open in IMG/M |
| Ga0307361_111107 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 987 | Open in IMG/M |
| Ga0307361_113611 | Not Available | 874 | Open in IMG/M |
| Ga0307361_113903 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 864 | Open in IMG/M |
| Ga0307361_115878 | Not Available | 796 | Open in IMG/M |
| Ga0307361_116576 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium | 775 | Open in IMG/M |
| Ga0307361_116879 | Not Available | 766 | Open in IMG/M |
| Ga0307361_118526 | Not Available | 724 | Open in IMG/M |
| Ga0307361_118701 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC | 720 | Open in IMG/M |
| Ga0307361_119079 | Not Available | 711 | Open in IMG/M |
| Ga0307361_120956 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes | 671 | Open in IMG/M |
| Ga0307361_122306 | Not Available | 645 | Open in IMG/M |
| Ga0307361_126180 | Not Available | 584 | Open in IMG/M |
| Ga0307361_126340 | Not Available | 582 | Open in IMG/M |
| Ga0307361_126884 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038 | 575 | Open in IMG/M |
| Ga0307361_128003 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon | 561 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0307361_101295 | Ga0307361_1012951 | F041847 | MDGKQDLRFGELVVDFANAPTPEEAGSAFVRGAAKAFGYGSKFLRNALDRYPTLKRFEGALQADDRELVGLLLEERRLLSVINNLPCNIVLASYECDQARVLLFRVQPLEPKWDCENPYEEDEVRIAVGAEGKAWLDEVAEMFDDRAPLAQEMDEVKERLLDCMEAYVGLGDRILAIRRSIPAEKAHEAQKWAAYYSRIEAEQEVLAELLERWRKVLGEIVRAEDLPRNQALLDLLAVYNVVNRRELAVGEDGTLFEKPLFEERYFIERAGLADEYYHNVLVYGFVEFLRVAGNRKRLRRCPACSAFFIGGTDRSEAKRCGACRAAAKDRQKRRK |
| Ga0307361_103068 | Ga0307361_1030681 | F018726 | MLPDPVTIAAASPTPSLVFVTIKQDGYGSERVDTGGNGYSVIINHSKNKGGGSRHYVQMTQVVDAVDPYSGLTRKQSASVSFSITRPSFGFTDAAIVALAKALTDFRDDSEVTTAKLIQFQS |
| Ga0307361_103078 | Ga0307361_1030783 | F055836 | PMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFRQDRELVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLKGRVFSVVETVERVTEKHGLRKEQTTVAILGVGEIGAAIISNLEEKGYRAVGIEIRIADGRVEIGREGMERLKGADLVVVQTPRGDDVVPYYGNLKDTAILIDDSHPRITVRPDDVKFYKVAIGRSGVEFRPPLPGYEKYWIPGCVQESMVVAESGKVDLSQEDFNRRSKELGFFAHLVDDR |
| Ga0307361_108180 | Ga0307361_1081802 | F074913 | MQLTTTFGGMWRWLRVAVARVFALVVRCRDMMLFVYSRVGKNRDTRRGSPAGAGAGRGASHKTASLFTQLSRHGKPMTYTDLL |
| Ga0307361_109340 | Ga0307361_1093401 | F028541 | GGQREQQGAFMNERERLKLINRLKTARTSEERDEILWYLAGQDKAARGKVQRAEPTGTGKPAPVPAPEKHPLGLPAGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA |
| Ga0307361_111107 | Ga0307361_1111071 | F070158 | QNMADATYYQEGAAGLGKPDASSEKPSTEALSPNDAAPEANGTEVVTKAELQRIKAEIEESVLRKTQSMTDKLGSKLDVRIKTAQDEAERAIRMLKASGVALTPEQERSISQTAVNEALTAKEASEAAQHQEAQSKPIDFVNGEVRKIMKRTGVYIEPDEANALIGEVDSPFDYVRKFEEICQSRSTRPPEESRIPTMSPSNGKATSVDSLRAQYDKEISDIVHGKHPSIRRGDVMAVTRLKEEYRKKGLSIY |
| Ga0307361_113611 | Ga0307361_1136111 | F015885 | MTVCKEIVDCVLANCSKLLPGIKDRAYFINFDCVDKDASTFDVDNALLLTQLVLKTTSPPCYAYCVEGYNFSNEHTVAMVKGRYQKTWDHNFVFRIFDNTPEVKEWIDNAIGSRFMVIIENNYNKNDGVEAEGRTVFEVLGWDFGLEINAAERDVNSDETLGGWVLTAGCSDTMKESLPPLAYFVGGTIATTRNALASLL |
| Ga0307361_113903 | Ga0307361_1139032 | F021795 | MKKEADRVRRWREKQKAEGKSSFTVVLSRDAREFLAAEKEKTGESYAAIMEKALSSLKRQAYAPPVLRHFPRREEALARAAAAPPAGRVGHDGNRQPRILIDDLANYPSLEDIEREQAAKEQSGIYDPRSGEGLITRLLRSSTGPFSRKKKWFETNKKINELNWKIITMYA |
| Ga0307361_115878 | Ga0307361_1158781 | F062800 | TSGAIARPMPAKFRVRMTYQNSEVFGTSTKVVRGLSEFLAKPPMYYNYLFGIYKYCRVLAVELEVHWVSTGSDASRVCIGRVPYSDTSGITYAQFCEMPESQTAVLPAKGGIDKLTQTKLVRPRNALGMQLDDHSYWVNSAQAISATPLHNDDYVLLIMSDGIGVTSASQAIIKLHYHVEWFDLQYAV |
| Ga0307361_116576 | Ga0307361_1165761 | F059998 | MDDLEFISDLALLELAKLNPTLSGQPLTEKAKKYFLSEIRSRRWELGRGRQVTPLTETGAIVRDAHGWPVSFQDVIREIAGEMFELPEKKTTVGVMTQDEYISAMRAATTPEQQIEVMNAWTEQQKRK |
| Ga0307361_116879 | Ga0307361_1168793 | F071272 | MLKETEAKARVYKAAVDQLADSMAAGAWQDGPAPKDGSWILGLFHGLPYVVVYDSWEVGGEMLPDGTGSPPDGHESGWCLAGDSLQVMDKDEPEKWARIIHPDRHMPASWDG |
| Ga0307361_118526 | Ga0307361_1185261 | F070166 | ELAALFHNQLWLQTKCSTDAQFRERYGNTLEALAKILKDCNFSRGLQPGTIKSVKAKLLTQEWDFLFPQRNMQNMEAQLRNSIFTTWRKSQGVEISKLPPKKHIGKGYRDHGTAPKPELDGSPSWQEVGSEFSNLEREDTENLLFLQKVVSGEIVYEPGTNKEIISKIKRTIQVREAIKRIDPNWRNTQIAEASGGKVIPKKVG |
| Ga0307361_118701 | Ga0307361_1187011 | F092121 | MPKHFYTLLIIPHKKKDSVKKFLATPLHFRLTAVVSCIFLGFFGYCAVDYLSIKLAQMELANLRQLTSTQQEQIDTLQEKISFFERKLADLRQVDEKIRAMASEVTGKARRSSKHQAAEAREQLLGVGGPMPAGEAGADKLTHLNRHMDRLLEDAAARERSLAELQEFLRAQRSIAAVTPTGWPVT |
| Ga0307361_119079 | Ga0307361_1190791 | F025291 | KASKNKQPNQRRGGNKPSVKSKHHMVNLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFVNMAIVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK |
| Ga0307361_120956 | Ga0307361_1209561 | F031111 | RFLIGKKRCISNIPQNSYYQTIVNIPAAYNFCCYYPQNLPSSQIGKQVKKILKPLNLALIKLSKPKLTFP |
| Ga0307361_122306 | Ga0307361_1223061 | F070167 | LDKEGEIMSWLGNALFGQSRLKGYDMTPQQLTQAYTPKTYSVDTSRYTALGEEFLDPYSSRNRGMYNDLKKVGVDAAAQQYLNSMRMQAAGQNPFATGQLQSSLASNLEGTRQAYNSYLNNAYQTGTGLLGYSLQGNLANAAAQNTAAMQGSQSALNYQLQKMQADAAMQMQRSQNQSGFFGGLFGNLVGASPALLFGTQSQTGLLNLLGL |
| Ga0307361_126180 | Ga0307361_1261802 | F070165 | VSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSAPGSTVFTFQPMSDLNVSVKVGVLTTFEYKYPTGALPDLYYEPAMIEVV |
| Ga0307361_126340 | Ga0307361_1263401 | F064732 | MPKVSEYKWKDTEAEAEAATAAARERCTMPLVQSAERHVRFPSSPMAPGQYIAATATRSTGQLDHPEDTELGNHPFLGLL |
| Ga0307361_126884 | Ga0307361_1268841 | F051235 | PMLLLLSLGRFLKINCIFTVYPGSQRDVDGYFPKGLKWFLKPVASGKPFVAGVITTGNGLGRGLVLAVPNTVDQFKQDRKLVGTIMKNLKLTRTLTGARTIAIAGQGPRFFRSHFPYEQPFVYGLRGRVFSVVETVERVTEKHGLQKEQTTVAILGVGEIGAAIISNLEEKGYRTAGIDIRISEGRVEISR |
| Ga0307361_128003 | Ga0307361_1280031 | F015738 | MPEIERPPVLLWAGLDRDLSPEIEAAICEVFPGDPERVHLATVRVMEVVLSRVPPSGLEGCAWCRHFDRPIDHHLVKEDRPACIEERNGCGNCPESTYRVRRVTDR |
| Ga0307361_131069 | Ga0307361_1310691 | F029768 | MLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIEEKQREGYSLEQAKENYFLFQTVEYLEFLEQAKVMSNHSLQFMERATEKMNGILQETESKIEQAIKEIAQEQEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |