3300029598: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Leu2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029598
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321356 | Ga0307369
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_RA_Leu2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42438810
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4
Not Available	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048337	Metagenome / Metatranscriptome	148	N
F065806	Metagenome / Metatranscriptome	127	N
F082739	Metagenome / Metatranscriptome	113	N
F092888	Metagenome / Metatranscriptome	107	Y
F097412	Metagenome / Metatranscriptome	104	N
F105254	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307369_100637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3911
Ga0307369_108709	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1118
Ga0307369_111089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	946
Ga0307369_112291	Not Available	882
Ga0307369_112317	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	881
Ga0307369_116038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728
Ga0307369_122182	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	574

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307369_100637	Ga0307369_1006371	F048337	QPDLQEKPTQNLPRREPNIRTASLFAINLPGNAVLCSKQARSTIMARKENNKMIEKQVTFEGILREEEEQSNDTARLQDYRVAAITKDATYVLIDALPYDFIVTNAFYRIKEAFDGTINLGTDVAPGRIIADADFVKTVGKKSTGKSLMLDAGKPILLVLGPGTTGKIEVHVTGFLLIPTLL
Ga0307369_108709	Ga0307369_1087093	F097412	GHETQEPNARRKKMSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKLPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPSKGA
Ga0307369_111089	Ga0307369_1110891	F097412	EMSVYEEMNEDATSGGMFWKPQPGKINKVRILKDPIRREADQKINRPSYQFVVTGDDPKVPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAVAGDGMDRKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0307369_112291	Ga0307369_1122911	F065806	CGIYLASSNGNTITTPTCNGNTYGIYLDNGSSQVVWGYAHDETIWSSAGGIGSWMGNNQKLVSIGESESGGAARNRVYFYGGYTQDNTAEADGGSGKCIQFNPKSATYWIEQDFNVPVTASTARTVSIKMKDDASFNGSVKLELWLNGVLIVGPTTKTMTTSYVAQEMTATSGMITADGVLVLKVKVYGTAGAVYADTLTYS
Ga0307369_112317	Ga0307369_1123172	F092888	MPGPASARGNYGMQPRNNKAIPTTSEGSQVHEQGRLEQNQNLFTLRVRKASGTIEFLSIGVCFTVVSVILIQAMATGQTAWNHAAFEPASSLVLAAVGYAGFMTSWKETSIAVDGLARRFTATTRNLLTRSSHEHEVPLPGIQAMDTEVDERTNTVRVTISRDNRETIRFQLDCNSYGPLEKYLKALLPKIPIITRDTTNYEADMLPGHVSALY
Ga0307369_116038	Ga0307369_1160381	F097412	MSIYEEMNEDATSGGMYWKPQPGKINKVRILKDPIRREADQKINRPSYQFAVTGDDPKTPLVWSVSAKGALQQIVAIMKANGLTTLVGGVLQVAIAGDGMERKYTIIPIELPTPANGAQVLLDFPAGSLEKALPKLFQPDIPAAPKGA
Ga0307369_116426	Ga0307369_1164261	F105254	LERGKKLMAEVATIYRLYGAAGTKYSLAGKTGRFCTQDSDPGLNNPCKIPPQGETYYSYRTTDCIGITGDFNQVRDIYIHCDGNFASEWGLDSGNGGGLFVGVRDAGDHGLPIDVVLHGSNQYAQATGTPGTTGHSIDDPTNGHPYYKDETEKVRDFDTCLANSPLLIDSGPYTDDFYSKAWVLSLKIVPTATYGAKSPKSVIVTYNIF
Ga0307369_122182	Ga0307369_1221821	F082739	MRKLLCILLVISAAIIGISAAEIQKDFRYTDVDFTPIDTNGTEDISDDILLPAVLGDLLPDGDGDGFFDVSYVLKKNGKVASTNPGQLYGVITVNNTTATTFTVTDVFGAQFNIHPAKLCGGVDIIRVDADGYATELSGTDQVVSATVDNDANTVSLEIALDEPLATDEELMIYCKFQTALK