3300029591: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Thr2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300029591
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116197 | Gp0321340 | Ga0307353
• Sample Name: Metatranscriptome of enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAT_UR_Thr2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 23672283
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	1
Not Available	4
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 44.11
  • Long. (^o): -88.23
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025291	Metagenome / Metatranscriptome	202	N
F028541	Metagenome / Metatranscriptome	191	Y
F056712	Metagenome / Metatranscriptome	137	N
F059033	Metagenome / Metatranscriptome	134	N
F070165	Metagenome / Metatranscriptome	123	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0307353_107062	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	802
Ga0307353_107519	Not Available	774
Ga0307353_107696	Not Available	764
Ga0307353_109101	Not Available	695
Ga0307353_110473	Not Available	640
Ga0307353_115949	All Organisms → cellular organisms → Bacteria	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0307353_107062	Ga0307353_1070621	F028541	EQQGAFMNERERLKLINRLKTARTSEERDQILWYLAGQDKAARGKAQRAEPTGTGKPAPGSVPEKHPLGLPGGKLGGMGSITSLLFLFYGLVTIAAAAAKIVQGQMEGDEIKQLIMGGIFLVVGVVLFVKAKRAQRKAAEEA
Ga0307353_107519	Ga0307353_1075191	F070165	MVRMRRRGRNARRSTQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVNVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLNFRLPKSTDFSLYSASGSTVFTFQPMSDLNVSVKVGVLATFEYKYPTGALPDYEPALILTH
Ga0307353_107696	Ga0307353_1076961	F025291	NLRKEINIFRDRAWRVITYNYHLGDHSSTGLYTLNVGADQRYMTFQTLLTTDEFQNMAVVYNEFKIHKAVFTSLPTSNSNRLPYLYVDIEPSTSAGVNPNNVRVCADDSARIFAPKALQPQSCEWNLQGIGPNFNMWLDTGATIPGQFQIGNYIFGSIPISLGWEVKFQLVVEFTNPK
Ga0307353_109101	Ga0307353_1091011	F070165	LGSLTGFQVPANPSNSKKITMVRMRRRGRNARRATQTLTHTAVFTMGGPTSVSASNLGLIGIATVSPARPCRPVHVKLTVVSGAPHIIRFAAYAGGKEEIFSSAPFAVGLAPRVLSFRLPRSTDFSLYSAPGSTVFTFQPMSGLDVSVKVGCLTTFEYKYPTGAHGDLRYEPAVIEVV
Ga0307353_110473	Ga0307353_1104731	F059033	LAAAWDVGTEFEPIVIDMLRISSFLRTAVTAKASHGIKHEYRFFKSLPLAVFREIGEGIVPQKIGPDKAQIDLKELVFDLYEDYQGILQYPGGKEGWLKDYYPIALMALTNAITQSSFYGNIPGFGYEKAFKGFHQYAKDLGQVVAQKGGSSGSCSSIFAVRWEKFDGASLRFNNTELLNVIDMTPNQPIPIVTDTTTNKQMNIFKWIFSSYF
Ga0307353_115949	Ga0307353_1159492	F056712	AGLVGILEGLEKSLVRRLMKSSGKQPFLIVFLILFLSMNKKGKKKIEPEKDENYWRVIGG