Sample 3300029582

Overview

Basic Information
IMG/M Taxon OID	3300029582 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133139 \| Gp0283754 \| Ga0245118
Sample Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35666
Sequencing Status	Permanent Draft
Sequencing Center	Beijing Genomics Institute (BGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	197947485
Sequencing Scaffolds	16
Novel Protein Genes	17
Associated Families	17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026592	Metagenome / Metatranscriptome	197	Y
F039198	Metagenome	164	Y
F042936	Metagenome	157	N
F047126	Metagenome	150	N
F055715	Metagenome	138	N
F056682	Metagenome	137	Y
F067720	Metagenome	125	Y
F067845	Metagenome	125	N
F068941	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F078004	Metagenome	117	N
F078693	Metagenome	116	N
F087334	Metagenome	110	N
F087335	Metagenome	110	N
F090515	Metagenome	108	N
F097172	Metagenome / Metatranscriptome	104	Y

Family

Category

Number of Sequences

3D Structure?

F013656

Metagenome

269

F026592

Metagenome / Metatranscriptome

197

F039198

Metagenome

164

F042936

Metagenome

157

F047126

Metagenome

150

F055715

Metagenome

138

F056682

Metagenome

137

F067720

Metagenome

125

F067845

Metagenome

125

F068941

Metagenome

124

F074899

Metagenome / Metatranscriptome

119

F078004

Metagenome

117

F078693

Metagenome

116

F087334

Metagenome

110

F087335

Metagenome

110

F090515

Metagenome

108

F097172

Metagenome / Metatranscriptome

104

Scaffold	Taxonomy	Length	IMG/M Link
Ga0245118_100264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	82286	Open in IMG/M
Ga0245118_100425	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	58394	Open in IMG/M
Ga0245118_101580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	15964	Open in IMG/M
Ga0245118_102146	All Organisms → cellular organisms → Bacteria	11319	Open in IMG/M
Ga0245118_106305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3924	Open in IMG/M
Ga0245118_110417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2552	Open in IMG/M
Ga0245118_111252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2392	Open in IMG/M
Ga0245118_112759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2155	Open in IMG/M
Ga0245118_116204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1768	Open in IMG/M
Ga0245118_117197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1679	Open in IMG/M
Ga0245118_126008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1164	Open in IMG/M
Ga0245118_131541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	968	Open in IMG/M
Ga0245118_131886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	957	Open in IMG/M
Ga0245118_132157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	949	Open in IMG/M
Ga0245118_140256	All Organisms → cellular organisms → Bacteria → Terrabacteria group	755	Open in IMG/M
Ga0245118_141529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	731	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0245118_100264

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

82286

Open in IMG/M

Ga0245118_100425

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

58394

Open in IMG/M

Ga0245118_101580

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes

15964

Open in IMG/M

Ga0245118_102146

All Organisms → cellular organisms → Bacteria

11319

Open in IMG/M

Ga0245118_106305

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

3924

Open in IMG/M

Ga0245118_110417

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2552

Open in IMG/M

Ga0245118_111252

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2392

Open in IMG/M

Ga0245118_112759

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2155

Open in IMG/M

Ga0245118_116204

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.

1768

Open in IMG/M

Ga0245118_117197

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

1679

Open in IMG/M

Ga0245118_126008

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

1164

Open in IMG/M

Ga0245118_131541

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

968

Open in IMG/M

Ga0245118_131886

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

957

Open in IMG/M

Ga0245118_132157

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

949

Open in IMG/M

Ga0245118_140256

All Organisms → cellular organisms → Bacteria → Terrabacteria group

755

Open in IMG/M

Ga0245118_141529

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae

731

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0245118_100264	Ga0245118_10026490	F068941	MNNKKFIIGVVLLLLLMLGGTYAYYKWSSSDNMNVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNNSTLVKKGNFGVYNSNTNTSGIAYATSGTTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN
Ga0245118_100425	Ga0245118_10042520	F067720	MSSTAYEHFVDTNKMYAAQEQFRGITKMVCARFRGLTKTYHLGNVNKLVTFCHQFAVLGNMVRNAGQLPQPFWLGAACGGGSCGASRCAART
Ga0245118_101580	Ga0245118_10158014	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINMDDGTTLRIKPILNKEGEPELLIGCVTGETVGEVYQWVSNYD
Ga0245118_102146	Ga0245118_1021467	F013656	MKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKAKIQKVILKANIYDM
Ga0245118_106305	Ga0245118_1063055	F090515	VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSI
Ga0245118_110417	Ga0245118_1104171	F039198	ITSCEFTNTKYIQIYLTEEELQKQETKEIIKKYKKEKYRVAIFVAGKENYPEILEKIITKQKELKRNVC
Ga0245118_111252	Ga0245118_1112521	F074899	QAATSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSK
Ga0245118_112759	Ga0245118_1127592	F067845	VLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALNADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR
Ga0245118_114243	Ga0245118_1142431	F078004	PAVSRRIQLPALLSAVSEHLSSWNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
Ga0245118_116204	Ga0245118_1162041	F097172	ASAVAPVMADDGMVTVEAATKNVTSAYKYHLEGYDKKGYPVSFSKTSFYKDLNALPTVKTGKTTINVPAVTPSVKSVSKKKSDPTYESFVKFKAPKTGKYVVTLTNLRGTDEKSVKTMYYCGFYKFSKTSKKYNLEGIDFDTVGDCDKLFENNYLEKFRAILDNYKTEHPEYEDAIEDTYEDEVHLVNLYSANKIKFTTKLKKGQTYVFVIDNSGSVFPDTPYNDSFYDGSMSCRRNWNYMEAYSFDLDIQLKK
Ga0245118_117197	Ga0245118_1171975	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLELPCILCSLLRYFHILSKKLQKTC
Ga0245118_126008	Ga0245118_1260081	F087334	MASRYPFVGAAVHLFPKNAIKMLSFSTSEKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ
Ga0245118_131541	Ga0245118_1315413	F056682	MKMQSRAGKVANQSVGQSELYPASFWAFPSKNRSTFPIQKLGKIHENQEVL
Ga0245118_131886	Ga0245118_1318862	F078693	LRAKREPELVLAPVRGAERFFIKANCSLLLAKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS
Ga0245118_132157	Ga0245118_1321571	F026592	LRTASPQGIAALAAQGGVATLTERSDVTFSVMQYPPADGE
Ga0245118_140256	Ga0245118_1402562	F042936	MGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0245118_141529	Ga0245118_1415292	F055715	LTKANEFDKINELLIERTAKKFKRASKNKLKKFLTNEKFCDKINELIRVGTAEILDN

Scaffold ID

Protein ID

Family

Sequence

Ga0245118_100264

Ga0245118_10026490

F068941

MNNKKFIIGVVLLLLLMLGGTYAYYKWSSSDNMNVNVKIDGGTVTFNGGSNITSTIIPTASKEEGIKKDITVKASKAGVTMNLYMNLTTMPDELKEKSFEYEIYYNNSTLVKKGNFGVYNSNTNTSGIAYATSGTTTLTLFTGRDVSTNSADKYTLYLWFNGKDYTNPNTMQSKKLSFDLYATGENAVLAGN

Ga0245118_100425

Ga0245118_10042520

F067720

MSSTAYEHFVDTNKMYAAQEQFRGITKMVCARFRGLTKTYHLGNVNKLVTFCHQFAVLGNMVRNAGQLPQPFWLGAACGGGSCGASRCAART

Ga0245118_101580

Ga0245118_10158014

F087335

MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINMDDGTTLRIKPILNKEGEPELLIGCVTGETVGEVYQWVSNYD

Ga0245118_102146

Ga0245118_1021467

F013656

MKKIYKEPNKSETETTINVLYSENILSICTNKVDLQKKLNKLLGEPAKEHKIKRSIAGSTWNISLDDKAKIQKVILKANIYDM

Ga0245118_106305

Ga0245118_1063055

F090515

VTTCCKAGPKAALQGTAPGRVACLEFAGGEKRKTNIAADYAVKVPAFTALLCRHIGSI

Ga0245118_110417

Ga0245118_1104171

F039198

ITSCEFTNTKYIQIYLTEEELQKQETKEIIKKYKKEKYRVAIFVAGKENYPEILEKIITKQKELKRNVC

Ga0245118_111252

Ga0245118_1112521

F074899

QAATSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSK

Ga0245118_112759

Ga0245118_1127592

F067845

VLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAYAPELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALNADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSTAMTAQLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR

Ga0245118_114243

Ga0245118_1142431

F078004

PAVSRRIQLPALLSAVSEHLSSWNTDFLFRDLLFRKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF

Ga0245118_116204

Ga0245118_1162041

F097172

ASAVAPVMADDGMVTVEAATKNVTSAYKYHLEGYDKKGYPVSFSKTSFYKDLNALPTVKTGKTTINVPAVTPSVKSVSKKKSDPTYESFVKFKAPKTGKYVVTLTNLRGTDEKSVKTMYYCGFYKFSKTSKKYNLEGIDFDTVGDCDKLFENNYLEKFRAILDNYKTEHPEYEDAIEDTYEDEVHLVNLYSANKIKFTTKLKKGQTYVFVIDNSGSVFPDTPYNDSFYDGSMSCRRNWNYMEAYSFDLDIQLKK

Ga0245118_117197

Ga0245118_1171975

F047126

VYLKTKKMTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLELPCILCSLLRYFHILSKKLQKTC

Ga0245118_126008

Ga0245118_1260081

F087334

MASRYPFVGAAVHLFPKNAIKMLSFSTSEKGSILLYPFRSSPLLAITFLYHPKDFFLYRAAALFEYREKHQ

Ga0245118_131541

Ga0245118_1315413

F056682

MKMQSRAGKVANQSVGQSELYPASFWAFPSKNRSTFPIQKLGKIHENQEVL

Ga0245118_131886

Ga0245118_1318862

F078693

LRAKREPELVLAPVRGAERFFIKANCSLLLAKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS

Ga0245118_132157

Ga0245118_1321571

F026592

LRTASPQGIAALAAQGGVATLTERSDVTFSVMQYPPADGE

Ga0245118_140256

Ga0245118_1402562

F042936

MGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG

Ga0245118_141529

Ga0245118_1415292

F055715

LTKANEFDKINELLIERTAKKFKRASKNKLKKFLTNEKFCDKINELIRVGTAEILDN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300029582: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35666

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences