3300029574: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_14_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029574
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283023 | Ga0243862
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 063_3_14_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 165602087
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Falcatimonas → unclassified Falcatimonas → Falcatimonas sp. MSJ-15	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F078822	Metagenome	116	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243862_100556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	43755
Ga0243862_134144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Falcatimonas → unclassified Falcatimonas → Falcatimonas sp. MSJ-15	681

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243862_100556	Ga0243862_1005561	F078822	SKVVLFVKHFFDIFLSLPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0243862_107774	Ga0243862_1077746	F101356	WAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ
Ga0243862_134144	Ga0243862_1341442	F026592	ILCCLRTASPQGIAALAAQGGVATLTERSDETFSVVQFSSADRE