3300029570: Human fecal microbial communities from Shanghai, China - P031V6

Overview

Basic Information

• IMG/M Taxon OID: 3300029570
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283539 | Ga0244916
• Sample Name: Human fecal microbial communities from Shanghai, China - P031V6
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 178942951
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067720	Metagenome	125	Y
F081354	Metagenome	114	Y
F094005	Metagenome / Metatranscriptome	106	N
F097172	Metagenome / Metatranscriptome	104	Y
F101357	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244916_100283	Not Available	67738
Ga0244916_100569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	42743
Ga0244916_104926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	5514
Ga0244916_111972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	2051
Ga0244916_144537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	571

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244916_100283	Ga0244916_10028341	F094005	MKKETVKLKKGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHHSKKSLEAIKKWLDDNGKHKDDETIEKVITLDKKLKKLIEKLNE
Ga0244916_100283	Ga0244916_10028350	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNTHNPDSLDKPFIQLSATFTSEFDIQEYNEWLRANQYKLYPLLLDILKISLKDNFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0244916_100569	Ga0244916_10056944	F067720	MASTTYEHFVDVNKMYAAREQFRHVTKMVCARFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAACGGGSRSAARCAART
Ga0244916_104926	Ga0244916_1049262	F097172	VQXXXXLAAACVATAVVPAMADDVVTAEATTKKVTSAYRYHLIGYDKKGYVMDGFSKASFYKDLNSLPTVKTGKTTINVPAVTSSVKSVSKEKGEPRYKSFVKFKAPKTGKYVFSLDNLQGTDDKSLKCFSGSIRKPVKNEKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYIDYTEYVSKHPVDKDKFTTRLKKGQTYVFVIDNIGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0244916_111972	Ga0244916_1119722	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHLEGCDKNGYPVDGFSKTSFYKDLNSLPSIKTGKTTINVPAVTSSVKSVSKEKGKPEYESFVKFKAQKTGKYVFTLDNLQGTDDKSLRCMMYCDFYQVSKTGKKYCLNSIEDSDTVGEYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYEYKTDSVNKYPVDKIKFTTRLKKGQTYVFAIDNRGMQKAV
Ga0244916_144537	Ga0244916_1445371	F081354	LVCENQQSSAHNFVKDFSSISSDFSSDQPPKKGAGRKISLEYRKAEVQTLFEPLSTAISSMELPKTFENKKLPNP