3300029565: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI022006-90

Overview

Basic Information

• IMG/M Taxon OID: 3300029565
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283484 | Ga0244861
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - SZAXPI022006-90
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 178492483
• Sequencing Scaffolds: 15
• Novel Protein Genes: 20
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. TF12-31AT	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F042095	Metagenome	159	N
F043945	Metagenome	155	N
F047755	Metagenome	149	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F070133	Metagenome	123	N
F073656	Metagenome	120	N
F075481	Metagenome	119	N
F076064	Metagenome	118	N
F082887	Metagenome / Metatranscriptome	113	Y
F084124	Metagenome	112	Y
F087213	Metagenome	110	N
F089590	Metagenome	109	N
F090514	Metagenome	108	N
F090515	Metagenome	108	N
F093883	Metagenome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244861_100043	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	155428
Ga0244861_101947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13809
Ga0244861_102630	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii	10313
Ga0244861_102645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	10251
Ga0244861_105397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	5185
Ga0244861_105523	All Organisms → cellular organisms → Bacteria	5054
Ga0244861_106312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	4448
Ga0244861_108568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3339
Ga0244861_109494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3032
Ga0244861_111455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2531
Ga0244861_112498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2331
Ga0244861_118483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → unclassified Blautia → Blautia sp. TF12-31AT	1586
Ga0244861_118503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1584
Ga0244861_125153	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1143
Ga0244861_152110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	529

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244861_100043	Ga0244861_100043201	F064725	VIQLAREGRLDFFCINDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTNNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLMQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYGRMWPNAFDKYIKLI
Ga0244861_100043	Ga0244861_10004323	F075481	MMRLRISLRAIFCLGLSLFLSSCGSRRQVSEASIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTDKDIDPATGERPVSSVTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
Ga0244861_100043	Ga0244861_10004324	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS
Ga0244861_100043	Ga0244861_10004326	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSKKLIYIDLQNMGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLKMLNITPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLNDWASGERGTGWNDDNMSGRGLEHLTGLIAVNSNSLRMDKLPDYIYEMRAITWFNVNASTHSQQRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0244861_100043	Ga0244861_10004340	F093883	MIIMRNMEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYDLLMKQYNEFKDMKANATGKTKADE
Ga0244861_100043	Ga0244861_10004345	F058555	METKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYKHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTIKFNVAYLLNELNKKLAGIGMHEISQSTIYRYISMFLGMCKKSISDLYDEVKKNNGIANAKDRKNVTIGHLRLSYRGKIMHIIIAEDFIKDVFLGVKGLEMSKAG
Ga0244861_101947	Ga0244861_1019473	F047755	MESEKVKHLIDMINEMDIKDKLRLAICMSQSQWYGLIYNTKENYEKFDTMLKEVDEEYRTTLIYFGQNKYFNINFVMAKLMEMEQADRNKIALYLFNSIKNQ
Ga0244861_102630	Ga0244861_1026308	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLAEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY
Ga0244861_102645	Ga0244861_1026458	F032286	MVKWVCQIVTPVRHRTLIFDVRFFAGNAADDALVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADYRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPK
Ga0244861_105397	Ga0244861_1053971	F084124	LLFGGLNKQAKAFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTATLFATEELLYRKIIMGAAQTRNPLKRVDLNFEFIKLNFVC
Ga0244861_105523	Ga0244861_1055237	F082887	MEKIKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAISNKEE
Ga0244861_106312	Ga0244861_1063123	F070133	MKRLLGLLLAVMVMMGGMAGAQASTDNASMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEQIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLMIYDWSFCACSDQDGNLLIGQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADITTIEMDEKSHSYFVCSYSISAGE
Ga0244861_108568	Ga0244861_1085686	F082887	MEKIKTIAKYTINVLAIISALVTGINAVEGITIPYAIQIVQVIAVVQGVISTYLLGQKAISSREKK
Ga0244861_109494	Ga0244861_1094941	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPA
Ga0244861_111455	Ga0244861_1114552	F043945	ALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLDGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVAELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAENGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFSLEDEEDSHLMPDMPGFFRWSAESSKYERVLYDGKELTTVNLPNGEATSVVHNLVNTLTLQPIQDYDVTLGDYVTHDAYYAYAPNKDNTAMYFVHDNTVWVMEYDEENSQFSEPRGIDKLPFFAEDTMCGFYWRGFYLIQTHDGLYLCHTGDETARVYLYGGVE
Ga0244861_112498	Ga0244861_1124982	F039198	MQITNTEIQGTKYVQIYLTEDELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC
Ga0244861_118483	Ga0244861_1184831	F090515	VTTCCKAGPKAALQGTAPKRVACLEFAGGEKRKTNIAADYAVKVPAFTALL
Ga0244861_118503	Ga0244861_1185031	F032286	VTPVRHRALIFDARLSTGNTADDVLVTGSTFRFCRLMCLCVKRRNIILNGKRRSLLNSTLFLADNHTRQKAISPFSLALIFTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRTYPVRTVMQLSTSHESPSQLRMKH
Ga0244861_125153	Ga0244861_1251531	F073656	MTMEQDQEQMQGALYVAVDDGNKIVAMERSRRGDEGFRALLDEFTDYAANCGAIPSVLFFDIRTTDAALLPRIEAAEHSYLLDPSTATEKLDIRHAVTLKDLLYCYKYDLDPLAEGNCGNMLSTKADYRQFRNEGLPPVAREDLRRCRAVETERGTVLFTQEPDGREACERYMQHHADCFFDPDLGVETLRVYEVEADPDGFWDKVNPQVLPTAGGMMWVPEHPFVDAEVLRRGYCLKEYDMRATADNFWTFVDPQHGENLYVSNGIRDLTGLQIIMQRGYGYLMQNAERYWNREFVFRSGFDNIERKYASDLSDEG
Ga0244861_152110	Ga0244861_1521101	F087213	GAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADTALDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGVEVAEDETNPYDMVIVLYGDEMTVGAFVLNPEV