3300029562: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35712

Overview

Basic Information

• IMG/M Taxon OID: 3300029562
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133139 | Gp0283758 | Ga0245122
• Sample Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35712
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 169961040
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047126	Metagenome	150	N
F055775	Metagenome	138	N
F067844	Metagenome	125	N
F071325	Metagenome	122	N
F087336	Metagenome	110	N
F092228	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0245122_100142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	121085
Ga0245122_100644	Not Available	43528
Ga0245122_101050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	26522
Ga0245122_102568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	10501
Ga0245122_105804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3756
Ga0245122_129066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	649

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0245122_100142	Ga0245122_10014296	F092228	MKKKCTLVLISVLTVACIVFAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNTTVNLPSNGSLINDNLFYINGDKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVVKQYIFKKYDLKSCKLLKSKIANYVNEIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPVKIAEKCDCDELLATKNFLYCYTINYILPRGVADLWVKGYLIDQLAIS
Ga0245122_100644	Ga0245122_10064426	F055775	MAQIAQQDNLVIEVTTTAAALDDATKKKLIECIEGGTITDVILVTKEAEKKISHARVVGWLVDTTGDSPKYTIDIINANSGAVKAIALN
Ga0245122_101050	Ga0245122_10105026	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCEFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESSCILCSLLRYFHILSKKLQKTC
Ga0245122_102568	Ga0245122_1025684	F087336	MHCLLRGMVAELEQVPKAFRAAVNQRRAAVKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLVEQRQVAFLGIAFQILPLKSKQKRAP
Ga0245122_105804	Ga0245122_1058041	F071325	RDFPSRLRFHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNTFLKAFHPHAIRFPAAFLLVHRFYLAFEELLSCATAYL
Ga0245122_129066	Ga0245122_1290661	F067844	MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQHRSYR