3300029559: Human fecal microbial communities from Shanghai, China - P031V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029559
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283538 | Ga0244915
• Sample Name: Human fecal microbial communities from Shanghai, China - P031V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 169519335
• Sequencing Scaffolds: 16
• Novel Protein Genes: 22
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F032312	Metagenome / Metatranscriptome	180	N
F039198	Metagenome	164	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F044555	Metagenome / Metatranscriptome	154	N
F057001	Metagenome	137	Y
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080673	Metagenome	115	N
F082887	Metagenome / Metatranscriptome	113	Y
F083452	Metagenome	113	N
F089054	Metagenome	109	N
F089590	Metagenome	109	N
F092228	Metagenome	107	N
F094005	Metagenome / Metatranscriptome	106	N
F097172	Metagenome / Metatranscriptome	104	Y
F099269	Metagenome	103	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244915_100157	Not Available	86563
Ga0244915_100223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	68076
Ga0244915_100313	Not Available	54886
Ga0244915_100365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	50393
Ga0244915_100427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	45200
Ga0244915_102167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	11866
Ga0244915_102513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	10443
Ga0244915_103081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	8670
Ga0244915_103642	All Organisms → cellular organisms → Bacteria	7405
Ga0244915_103732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7237
Ga0244915_105282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	5130
Ga0244915_110812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2435
Ga0244915_116966	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1500
Ga0244915_126818	Not Available	925
Ga0244915_127414	All Organisms → cellular organisms → Bacteria	903
Ga0244915_141133	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	600

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244915_100157	Ga0244915_10015764	F089054	MLTSGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQQINPWHKHSTYIRLKLRDILQIPLTGITIIDIIPLP
Ga0244915_100223	Ga0244915_10022356	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHLEGCDKNGYPVDGFSKTSFYKDLNSLPSIKTGKTTINVPAVTSSVKSVSKEKGKPEYESFVKFKAQKTGKYVFTLDNLQGTDDKSLRCMMYCDFYQVSKTGKKYCLNSIEDSDTVGEYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYEYKTDSVNKYPVDKIKFTTRLKKGQTYVFAIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0244915_100313	Ga0244915_10031337	F064817	MNIKNLFNRFCKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0244915_100313	Ga0244915_10031339	F105375	MKNNETFQTTQPLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADAMVNFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0244915_100313	Ga0244915_10031344	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPGDLVSLSQHHKR
Ga0244915_100313	Ga0244915_10031349	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSETPMGMCKIFDNQDHGFWHRVIKPWFQPERFGITHLWFSSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENHIFGYWFPPYKKYIPHRIKVLRLALKDLERIKEEYGKD
Ga0244915_100313	Ga0244915_10031350	F032312	MPKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDAIVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0244915_100313	Ga0244915_10031351	F094005	MKKETVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHHSKKSLEAIKKWLDDNGKHKDDETIEKVITLDKKLKKLIEKLNE
Ga0244915_100365	Ga0244915_10036523	F092228	MKKKCTLVLISVLTVVCIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGLRYVTVCKDNFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVANSWVKCYLIDQLAIS
Ga0244915_100427	Ga0244915_10042756	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEATTKKVTSAYRYHLIGYDKKGYVMDGFSKASFYKDLNSLPTVKTGKTTINVPAVTSSVKSVSKEKGEPRYKSFVKFKAPKTGKYVFSLDNLQGTDDKSLKCFSGSIRKPVKNEKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYIDYTEYVSKHPVDKDKFTTRLKKGQTYVFVIDNIGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0244915_100427	Ga0244915_10042757	F097172	MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPTVTSSVKSVSKEKDNPEYESFVKFKAPKTGKYVVTFDNLQGTDDKSLKCFSGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYIDYTDYVNKRPVDKIKFTTRLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0244915_102167	Ga0244915_1021676	F099269	VHGVLLSVQVRELLLLDDLGDRAGGASVLASATGDAGILVSDGSDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV
Ga0244915_102513	Ga0244915_1025132	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFFSFPFSFRANFAQALFSSLLFVSDTRAKSILFLLFESEIAHLQGQYRFNSHRYCFSAFLVL
Ga0244915_103081	Ga0244915_1030813	F082887	MEKIKKIAKYATNILAIVSALVAGINAVEGITIPYAIQIVQIIAVVQGVIGTYLLGQKAIAEKEEK
Ga0244915_103642	Ga0244915_1036428	F013656	MKKIYKEAIKSEIETNINVLYSENKIVIYTNKVSLQKQLNKLIGEPTKEYKIKRSIAGSLWEIPLEDKTRIQKLIV
Ga0244915_103732	Ga0244915_1037327	F039198	MKLTITEIQGTKYVQIYLTEDELQKKETKDLIKKYKQEKYSMAIFVTGKENYPEVLKKIVMKQVELNNNVC
Ga0244915_105282	Ga0244915_1052825	F042936	MERGGGKGRVWKTKEGRMKTSGMRNEQPGIVDRGEDTIRNFKKVEQEGSLTPLYLGKVYFRSRLRGKG
Ga0244915_110812	Ga0244915_1108122	F013656	KGSTMKKIYKEPNKSEIETTINVLYSENTLSICTNKVDLQKKLNKLLGEPAKEYKIKRSIAGSTWNISLDDKIKIQKIILKANIYDI
Ga0244915_116966	Ga0244915_1169661	F057001	MPIQVSRVRANLMTSKELNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKENDIKVDRAVVPALVALAKDKEVVIQLCKDILPRVDETFCAYKEIERVYLDKQDQDKNTKLSEDKVAEISITGKAHKRFGYNEPIEYEGGVYYDVFNGIDKRIIKCATPIKRYTFNLIAKCVTYYLTHPKNDR
Ga0244915_126818	Ga0244915_1268181	F089590	KMKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0244915_127414	Ga0244915_1274143	F083452	KRPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR
Ga0244915_141133	Ga0244915_1411331	F080673	MDEIMKLQDEALLYLRDNITKDEAYYILTTENEMTEVLMSKRKDGSKRIKILDAEYTIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFVYFMARML