3300029549: Human fecal microbial communities from Shanghai, China - P017V6

Overview

Basic Information

• IMG/M Taxon OID: 3300029549
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283517 | Ga0244894
• Sample Name: Human fecal microbial communities from Shanghai, China - P017V6
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 181510658
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F032286	Metagenome / Metatranscriptome	180	Y
F042936	Metagenome	157	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F056682	Metagenome	137	Y
F076064	Metagenome	118	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N
F089054	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244894_100289	Not Available	86751
Ga0244894_100469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	57015
Ga0244894_100493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	54469
Ga0244894_100563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	48819
Ga0244894_100594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	46471
Ga0244894_101313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	21868
Ga0244894_102179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	12769
Ga0244894_102411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	11451
Ga0244894_118529	All Organisms → cellular organisms → Bacteria	1152
Ga0244894_119354	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1100
Ga0244894_121493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	983

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244894_100289	Ga0244894_10028925	F089054	MLTLGKFLVSFEVPGPLPGTTEGFCEEMNVVYRTEELNTYLRYPKQEINPWHKHSTYIRLKLREILKVNLTDITIIDIISLP
Ga0244894_100469	Ga0244894_10046925	F047126	LFPKAYLKTKKMTNILQTQAGFKSKSLGSLCGFQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLRYFHILSKKLQKTC
Ga0244894_100493	Ga0244894_10049315	F088914	VGRILPVCSGFFVFWSRKEGVNYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPDTPKENRKNPGEFIVFSAWYAAKALEMDVK
Ga0244894_100563	Ga0244894_10056326	F042936	MGRGGGKGRVWKTKEGIMKTSGMRNEQPGIVDRGEDTIRKFEKVEQEGALIPPYLGKVYFRSRSRGKG
Ga0244894_100594	Ga0244894_10059417	F088921	LGATIRLYKIGAGKNHFLCSEKSKSTVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNK
Ga0244894_101313	Ga0244894_10131321	F032286	VTPVRHRALVFNTRLFAGNAADDTLVTGDTFHFCRLVCLCVKRRNIILNGKRRSLLNSTLFRADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRRGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKIADFHAYGQDRKRAEI
Ga0244894_102179	Ga0244894_1021799	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRANFAQALFSSLFFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0244894_102411	Ga0244894_10241113	F026592	LLAADVSQNRLRTASPQGIAALAAQGGVAPLTEGRDETFSLGQFSSADRE
Ga0244894_118529	Ga0244894_1185294	F056682	VVEKPHKQNTMKMQSRAGKVANQSVGQSEMYPASFWAFPSKNRSTFPIQELRKNREDQEV
Ga0244894_119354	Ga0244894_1193542	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLXXXXFSVRRQIRLCAPDLKRRNEAKRPPKPALKFY
Ga0244894_121493	Ga0244894_1214933	F026489	VAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLF