3300029542: Human fecal microbial communities from Shanghai, China - P040V1

Overview

Basic Information

• IMG/M Taxon OID: 3300029542
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133133 | Gp0283556 | Ga0244933
• Sample Name: Human fecal microbial communities from Shanghai, China - P040V1
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151261104
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2112312
  • Long. (^o): 121.4647709
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F055715	Metagenome	138	N
F078693	Metagenome	116	N
F087335	Metagenome	110	N
F087336	Metagenome	110	N
F092228	Metagenome	107	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244933_100006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	319977
Ga0244933_100278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	71798
Ga0244933_100327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	64652
Ga0244933_100799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	29615
Ga0244933_101712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	12384
Ga0244933_102140	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	9545
Ga0244933_102665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	7267
Ga0244933_106733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2739
Ga0244933_110540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1811
Ga0244933_123503	Not Available	891

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244933_100006	Ga0244933_100006182	F092228	MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGSKLCCLDTTTNTRKILDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS
Ga0244933_100278	Ga0244933_10027859	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTXXXXXXXXXXXPEKTEDSRLFGVKIF
Ga0244933_100327	Ga0244933_10032747	F078693	MVRAPVRGAERSFIKANCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS
Ga0244933_100799	Ga0244933_10079910	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF
Ga0244933_101712	Ga0244933_10171215	F087335	MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIGPVLNETGEPELLIRCVTEESVETVYQRAANYD
Ga0244933_102140	Ga0244933_1021405	F099451	MEIKNVGQLRKIIENLSDDYEIEMRVRRELSEEELKQCRYPYPYDTEYLTLEFDDIGVSDKVLCLGVTSKIN
Ga0244933_102665	Ga0244933_1026657	F055715	LTKANEFDKMNELLIERTAKKFERTSKNKLKKFLTNEKFCDKINELIQVGTAKIL
Ga0244933_106733	Ga0244933_1067331	F078693	AERSFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGVVETEKS
Ga0244933_110540	Ga0244933_1105403	F087336	MVAELEQVPKAFKAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFPGIAFQILPLKSKQKRAP
Ga0244933_123503	Ga0244933_1235031	F026592	TASPQGIAALAVQGGVATLTERSDATFAGKQFSSADRE