3300029509: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005369-33

Overview

Basic Information

• IMG/M Taxon OID: 3300029509
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283425 | Ga0244802
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005369-33
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120562685
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052660	Metagenome	142	N
F084124	Metagenome	112	Y
F087336	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244802_100020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	198214
Ga0244802_100523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	41064
Ga0244802_102262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7882
Ga0244802_120416	All Organisms → cellular organisms → Bacteria	715

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244802_100020	Ga0244802_100020197	F084124	VFRLPNSELFGGLNTTAKAFARATKGNKHHFHSQRIALTMFLAFLFIMGXXXXXXXXXXXXSTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0244802_100523	Ga0244802_1005232	F084124	LNKQAKAFARATKENTLHFHSQRNALTMFLAFLFLMAVACFSKLSFSTQTAWLFAPDKLLYRKILWALPKPAIFEKIE
Ga0244802_102262	Ga0244802_1022629	F052660	MCILRVLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYRRFFYGGILMGIVLPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNF
Ga0244802_120416	Ga0244802_1204161	F087336	RGMVAELEQVPKAFRAAGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP