3300029501: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005363-20

Overview

Basic Information

• IMG/M Taxon OID: 3300029501
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283419 | Ga0244796
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005363-20
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 83358072
• Sequencing Scaffolds: 4
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h53	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F090484	Metagenome	108	N
F094005	Metagenome / Metatranscriptome	106	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244796_100197	Not Available	70157
Ga0244796_100446	Not Available	33771
Ga0244796_100450	Not Available	33039
Ga0244796_101645	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ct1h53	7220

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244796_100197	Ga0244796_10019731	F099406	MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSNYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFANTDSAVGASEYDIEIQVGTFVVIQDKTYEAMNNMVTLSNTILSYLNFMAMPPKVVTTLANLPKGAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
Ga0244796_100197	Ga0244796_10019751	F090484	MDIPKNPSDFFLLQIMKLQLGRNINISLRLLEQWSDDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSRSYYGLIDSTISNKTIALYLNVGLTKAKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKEDFNFFLRDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASSMAKEAHKDFWEGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSEWSKEKVATVKASMTDAEACCAEVGTSVAGVCGRVSRRMKSYNNTATDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISVQSLPNINITVDNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0244796_100446	Ga0244796_1004467	F060985	MSNIDEKAKNNFTIEMRIFENYEKVKHEKIKVIDFLRHAGTNLGMCKIFDNQNHEFWHSVIKPWFQPERFGITHLWFPEGFSYIGYGEYHIIRGNRWLKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLRLALKD
Ga0244796_100446	Ga0244796_1004468	F032312	MARIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVVWFIIFLYGLVS
Ga0244796_100446	Ga0244796_1004469	F094005	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKFIEKLNE
Ga0244796_100450	Ga0244796_1004501	F044555	MKTTNPSSRITISQNGNQILSCKVYKEPNYILSMSNEEILELISGLDYIGNLPMVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISRFQAQYNIQEINPYLQDILQNPEDLVSHSQHHKR
Ga0244796_100450	Ga0244796_1004509	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV
Ga0244796_101645	Ga0244796_1016455	F098313	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSKASFLNLVRDKGDDRAFKLLWNFQSENKMTMRNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCAGEMFGFLEEEKDGKEN
Ga0244796_106059	Ga0244796_1060594	F101356	DVGELIPVATPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDSTKVYVKYLYGQPDSDTYLKMKYESDHRISIYLTSPNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ