3300029494: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 097_5_2_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029494
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283172 | Ga0244011
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 097_5_2_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 256433179
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F052660	Metagenome	142	N
F055775	Metagenome	138	N
F059106	Metagenome	134	N
F067720	Metagenome	125	Y
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F081354	Metagenome	114	Y
F097172	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244011_1001255	Not Available	30515
Ga0244011_1008095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	4417
Ga0244011_1009122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	3859
Ga0244011_1012206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	2763
Ga0244011_1013456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2472
Ga0244011_1020360	All Organisms → Viruses → Predicted Viral	1581
Ga0244011_1028621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1119
Ga0244011_1028651	All Organisms → Viruses → Predicted Viral	1118
Ga0244011_1046637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	699
Ga0244011_1048245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	676

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244011_1001255	Ga0244011_100125551	F044555	MKTTNPSSRITISQNGNQILTCKVYKELNYILSMSNEEILEFISGLDYIGNLPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLFDTLVDELKGTISRFQAQYKIQEINPDILQNPEDLVSLSQHKR
Ga0244011_1008095	Ga0244011_10080958	F068855	MRKSLAAQGLQAEKESENANVQNAGWLHSFDADYHYRGSDLHYHVNVSTALSEGGAVW
Ga0244011_1009122	Ga0244011_10091221	F059106	RVILLQTFVWIVDLKVREHLTEYLKKDIKYHQVIIEVLV
Ga0244011_1012206	Ga0244011_10122061	F097172	MKKTMLKKLMCAVLTAVCVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPSVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDFVNKYPVAKDKFTTKLKKGHTYVFIIDNTLGKTTCKPYFTTHGSDEQSCLYNTNYLKAYSFDMNIEYKK
Ga0244011_1013456	Ga0244011_10134564	F047125	MDVALLLMVLGVMLSGFWAADALDHIRREILRQEGKRRGWWS
Ga0244011_1020360	Ga0244011_10203601	F067720	MASTTYRHLGDVTEMFAAQEQFRDITKLVTKRHQFASIGNMVRNAGQLPQPFWLGVGRGGGSRSLSASVARA
Ga0244011_1028621	Ga0244011_10286211	F074899	MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVG
Ga0244011_1028651	Ga0244011_10286512	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVEAIALN
Ga0244011_1046637	Ga0244011_10466371	F081354	LVRENQQSSVLNFVKDFSSIFPKSRRRSPLKKGAGCKNPLENGKAEVQTLFEPLSTAISSMELPKNFENKKLPNTLRRLAFLPFHL
Ga0244011_1048245	Ga0244011_10482451	F052660	VLPENTPEKIGQERAGTEWTVVKSKIRLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFACWWPAAAGHSRSADALPGKSNF