3300029481: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001806-13

Overview

Basic Information

• IMG/M Taxon OID: 3300029481
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283230 | Ga0244053
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001806-13
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 170724719
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F062845	Metagenome	130	N
F067845	Metagenome	125	N
F068855	Metagenome	124	N
F071325	Metagenome	122	N
F087335	Metagenome	110	N
F087336	Metagenome	110	N
F090514	Metagenome	108	N
F097172	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244053_100168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia	74259
Ga0244053_100271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	54943
Ga0244053_100396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	43398
Ga0244053_100565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	34286
Ga0244053_100578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	33811
Ga0244053_100664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	30141
Ga0244053_101632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	14402
Ga0244053_104501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5959
Ga0244053_110244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2754
Ga0244053_121593	All Organisms → cellular organisms → Bacteria	1335

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244053_100168	Ga0244053_10016822	F067845	MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVVHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMSHTDDLNDFLYWSGCYGVPKDVTVALLLDDSAAMTAWLYAPQADSAAAKLLDDAVGHNEMGAAFIDYNGTAYVVAVFR
Ga0244053_100271	Ga0244053_10027135	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATRKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLNIYICRIAKNGKKYFLEDDLYPDTVGNYGDLYENNYLARLRTILDNYKAEHPEYADVIEYDYNDYTDFVNKRPVDKDKFTTRLKKGHTYVFIIDNSLGKTTCKPYFTTHGSDEQSCLYNTNYLAAYSFDMNIEFRK
Ga0244053_100271	Ga0244053_10027136	F097172	MKPGKVKMSKQGNVYVGKSSKSFPFFLDVFQNGSIYKVKGPKDFLSAAYSNIFYLWNPKEGFIMKKNVLKKLMCAVLAAACVATAVVPAMADDVITVEAATKKVTSAYKYHLEGYDKKGYVMDGFSKASFCKDLNSLPAVKTGKTAINVPAVTSSVKSISKEKRNPRYKSFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMLSGDLCQIFKTGKKYYLDGVEDSDTVGKYDTLYENNYLAKFRIIFDNYKAEHPEYADAIDETYNDESEYVSKHPVNKIKFTTRLKKGQTYVFVIDNRGMAEPCKPYLDDFGSDHQSCLSGGNYLKAYSFDMNIEYRK
Ga0244053_100271	Ga0244053_10027137	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPTVTSSVKSVSKEKDNPEYESFVKFKAPKTGKYVVTFDNLQGTDDKSLKCFSGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYIDYTDYVNKRPVDKIKFTTRLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK
Ga0244053_100396	Ga0244053_10039645	F068855	VPTVEAQGPQVRKSLAPQGLQDEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW
Ga0244053_100565	Ga0244053_10056531	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTADTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD
Ga0244053_100578	Ga0244053_10057813	F026489	MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF
Ga0244053_100664	Ga0244053_10066423	F026489	MEQGRGEEDVAERCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRAAPEKTEDSRLFGVKIF
Ga0244053_101632	Ga0244053_1016325	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADIPPRLTGAKWFVILLTIVPAGSRARAGSSLPLIPASNIFLKQTPRRGLPLAWNAGAGSFLFCG
Ga0244053_104501	Ga0244053_1045013	F062845	MDSMKKTPFILHEKFRSDNNEQRKEDFQKEFERYIINGLLNAVPSRACT
Ga0244053_110244	Ga0244053_1102446	F087336	MVCFLTGNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERGTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
Ga0244053_121593	Ga0244053_1215931	F071325	ISKVVLFVKHFFDIFLSFPNPFLKAFHLHAVRFPAAFLLVHRFYLDFEELLSCATAYL