3300029477: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001885-35

Overview

Basic Information

• IMG/M Taxon OID: 3300029477
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283306 | Ga0244129
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001885-35
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 160134936
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F042936	Metagenome	157	N
F067720	Metagenome	125	Y
F071325	Metagenome	122	N
F078822	Metagenome	116	N
F088920	Metagenome	109	Y
F089005	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244129_100490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	49310
Ga0244129_100735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	33744
Ga0244129_100878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	28633
Ga0244129_100897	Not Available	28096
Ga0244129_100925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	27016
Ga0244129_101133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	22605
Ga0244129_101981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	12498
Ga0244129_106853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3209

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244129_100490	Ga0244129_1004909	F088920	LFVKWNPKNHHFIFLFLAFFSFVSARPHYYLTFGAGLILHLILHFSQKAAIFALKRVIFLLFVPTLFFAGLSVFSPQTSPKISGQTSLY
Ga0244129_100735	Ga0244129_10073527	F071325	FQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPAAFLLVHRFYLVFEELLSCATAYL
Ga0244129_100878	Ga0244129_10087824	F078822	LSSTFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCAAAYL
Ga0244129_100897	Ga0244129_10089724	F067720	MASTTYKHFVDANKMYAEQEQFRDITKMVCARLRGLTKTYHFAVIGTMVRNAGQLPQPFWLGAAYGGGSCSAARCAARA
Ga0244129_100925	Ga0244129_10092523	F078822	KVVLFVKHFFDIFLSFPNAFLKAFLPHAVRFPATFLLVHRFYLAFEELLSCATAYL
Ga0244129_101133	Ga0244129_1011338	F042936	VWKTKEGIMKTSGIVDRGEDTIRNFKKVEQEGALTPPCLGKVYFRSRLRGKG
Ga0244129_101981	Ga0244129_1019811	F089005	LTKSKQRSIIALALLRLATSNEESKQALKVRRTLKIEQRENSKETRNDFEESSKNYSEMYTKK
Ga0244129_106853	Ga0244129_1068533	F039198	MKLTIAEIQGTKYVQIYVTEEELQKEETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC