3300029472: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001955-57

Overview

Basic Information

• IMG/M Taxon OID: 3300029472
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283374 | Ga0244197
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001955-57
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129477436
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055775	Metagenome	138	N
F067720	Metagenome	125	Y
F087335	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244197_100077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	128587
Ga0244197_100248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	71003
Ga0244197_100831	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	25566

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244197_100077	Ga0244197_10007754	F067720	MASTTYDHFAGDGKMYASKEQFRHVTKMVCGRFRDLTKTYHLGNVTVMVRNAGQLPQPFWLGAARGSGSCSAARCAART
Ga0244197_100248	Ga0244197_10024849	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIEPFLNKEGEPELLIGCVTEETVEEVYQWVSNYD
Ga0244197_100831	Ga0244197_10083129	F055775	MAQIAQQDNLVIEVSTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYRIDIINANSGAVAAIALN