3300029467: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001859-113

Overview

Basic Information

• IMG/M Taxon OID: 3300029467
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283281 | Ga0244104
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001859-113
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 132599729
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032312	Metagenome / Metatranscriptome	180	N
F055775	Metagenome	138	N
F071325	Metagenome	122	N
F080163	Metagenome	115	N
F089005	Metagenome	109	N
F092228	Metagenome	107	N
F099269	Metagenome	103	N
F105375	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244104_100001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	521572
Ga0244104_100541	Not Available	47545
Ga0244104_101304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	18798
Ga0244104_101652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	13285
Ga0244104_103030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	5605
Ga0244104_103695	All Organisms → cellular organisms → Bacteria	4392
Ga0244104_108497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	1675
Ga0244104_108901	All Organisms → cellular organisms → Bacteria	1587
Ga0244104_119966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	665
Ga0244104_123812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	559

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244104_100001	Ga0244104_10000181	F092228	MKKKCTLVLISVLTVVCIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKIIDTDCRSFVCNNEVIAYTKNDSVILKNSDTIENIGNIKFDNQIYYINISDGNLYIAERIFEDETDEYGYSLKVGKQYIFKKYDLKSCKLLKSKNANYVNGLRYVTVCQDTFWFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIIRKTVESPYNGIWKLEVGSNKPAKIADKCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS
Ga0244104_100541	Ga0244104_10054166	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTIADVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGKVEAIALN
Ga0244104_101304	Ga0244104_1013041	F071325	FHKFQYCSIFKVLLALLSDSSIIISKVVLFVKHFFDIFLSLPNAFLKVFHPHAVRFPATFLLVHRFYLAFEELLSCATAYL
Ga0244104_101652	Ga0244104_1016521	F089005	LTKSKQRSIIALTLLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNY
Ga0244104_103030	Ga0244104_1030306	F099269	MRRPPFFVHGVLLSVQVRELLLLDDLGDRASGASVLASATGDAGVLVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV
Ga0244104_103695	Ga0244104_1036951	F089005	LALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEESSKNYSEMYTKKHQE
Ga0244104_108497	Ga0244104_1084972	F080163	MKTIKFLQESFETKERFQQEISFKYSYNRNIVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCDTKQFLESINDFDKIIFVIITYMKTYFDFCKDYSKISLHIHLVQFDFTTSVLIQGFYNYSHRDLNFSTKFKSQVLDSENELLQEKLDLIREEICELIGVDPNLEKQGHEDNYVFNLNIESDNQIGFFLQATEL
Ga0244104_108901	Ga0244104_1089014	F032312	MARIKDYDEDLSAPKLLSERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0244104_119966	Ga0244104_1199661	F026489	GGCSLLTPKENQKSASDFDALEPRKRGYSPLLTPKRRATPEKTEDSRLFGVKIF
Ga0244104_123812	Ga0244104_1238121	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADAMVNFAMNFTDGEAN