3300029466: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001853-104

Overview

Basic Information

• IMG/M Taxon OID: 3300029466
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283275 | Ga0244098
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001853-104
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 125077162
• Sequencing Scaffolds: 9
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F039198	Metagenome	164	Y
F042095	Metagenome	159	N
F042936	Metagenome	157	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F059106	Metagenome	134	N
F067720	Metagenome	125	Y
F068941	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F078006	Metagenome	117	N
F085718	Metagenome	111	N
F087334	Metagenome	110	N
F089590	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244098_100037	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	144534
Ga0244098_100095	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	84528
Ga0244098_101236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	15254
Ga0244098_101692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	11492
Ga0244098_103627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5352
Ga0244098_103749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5151
Ga0244098_112724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1426
Ga0244098_113033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1396
Ga0244098_129775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	641

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244098_100037	Ga0244098_100037113	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFMEVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0244098_100037	Ga0244098_100037115	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGIANVDWGDGIKEQFPMTKVQGRDDYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLNDWVNGERRTGWNDDNMSGRGLEHLTGFVAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAVYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0244098_100037	Ga0244098_100037158	F057001	MPIQVPRARANLMTSKDINKVQNEVKKASEKTLTSAVKAWCQIFKSGKEINEILKDNDIKVDKSIVPALVALARDKEVVIQLCKDILPRVDETFCAYKEIERIYLDKQDQDRNTKLSEDKVAEISITGKAHKRFGYNEPIEYEGGVYYEVFNGSDKRIVKCAVPIKRYTFALIAKCVTYYLTHPKNER
Ga0244098_100037	Ga0244098_100037171	F078006	MLNQALAGRKEYHDRTCADMVRGRFPAPWHNLNINDMGDNILRKAADELKKAGCRVFVWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0244098_100037	Ga0244098_100037173	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGDRPIVVMIENNNVDDYIILRYNETGRRNINGKSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGNIYLQGSSKSNVSYYVGRLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV
Ga0244098_100037	Ga0244098_10003777	F050794	MQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMRDLLNELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG
Ga0244098_100095	Ga0244098_100095135	F067720	MASTTYKHFVDANKMYAAQEQFRDITKMVCARLRGLTKTYHFAVIGTMVRNAGQLPQPFWLGAACGGGSCSAARCAAKT
Ga0244098_101236	Ga0244098_10123619	F039198	MKLTISEIQGTKYVQIYLTEEELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVGLNRNVC
Ga0244098_101692	Ga0244098_1016926	F087334	MASRYPFVGAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRTAALFEYREKHQ
Ga0244098_103627	Ga0244098_1036271	F059106	IAWKIRAILLQIFAWIVDLKARGHLTGYSRKDIKFRQVTIEVHV
Ga0244098_103749	Ga0244098_1037491	F042936	VEDQGEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKVYFRSRLRGKG
Ga0244098_112724	Ga0244098_1127241	F074899	KLFDPHRDPHGEMSGRKQWNKQAATSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSTEKP
Ga0244098_113033	Ga0244098_1130332	F026592	TASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE
Ga0244098_129775	Ga0244098_1297751	F068941	MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVKASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVTKGNFKAYNASSNASGITYASSGVTTLILFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNK