3300029464: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001923-142

Overview

Basic Information

• IMG/M Taxon OID: 3300029464
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283342 | Ga0244165
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001923-142
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113342529
• Sequencing Scaffolds: 6
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F068941	Metagenome	124	N
F076189	Metagenome	118	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078006	Metagenome	117	N
F083452	Metagenome	113	N
F085718	Metagenome	111	N
F089590	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244165_100055	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	135018
Ga0244165_100603	Not Available	24633
Ga0244165_103047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5291
Ga0244165_103311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae	4879
Ga0244165_114915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1221
Ga0244165_130098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	569

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244165_100055	Ga0244165_1000551	F058555	ARVTSRLRKTIVHAHSALRTSPTLLKQQMGDLHRLPIHPNNLFRIYGTRIFAAKILQKMMGTKISLLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKRCKQVTAYLSIINVQKHVFLRNRMREGYRDRIEVNTDDFIDILSDGIAYFCYRHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKDIFVGKKTSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIDIGMQEISQSTIYRYISMFLDMCKKSISDLYKEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKAG
Ga0244165_100055	Ga0244165_100055107	F076653	MTLSDKYFGWKDIFFDRFVYCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRVEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGEEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYDKGFKERLAKRFNKSLGGDGELFGANLACMVCDRRNIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYSYYTFNK
Ga0244165_100055	Ga0244165_100055151	F050794	MQDLRIQRVKVLMMLYTSNYFVKVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYD
Ga0244165_100055	Ga0244165_100055154	F077313	MSKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGIEPLVNTNQGLPAPVNPLGIYSLDTPDQLRTKYANAFDQDNVFPASFKGSLQRIAENYQDNGITLNNITVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARSVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDIVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMIPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNARTWADTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDTKTGPNGQLIADPQGDILSYRRLYPAQEVTKSKKG
Ga0244165_100055	Ga0244165_100055162	F064725	VIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLICEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYDWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLVQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSCERMWPNAFDKYIKLV
Ga0244165_100055	Ga0244165_100055181	F106193	VGCNTCKEKALRAERERIERSMMNHSSSTAVSDMEYASRSTAGCMVMQDPLQTMERDVVSIYKQVRTKGDGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRNNYILR
Ga0244165_100055	Ga0244165_100055186	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFNAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0244165_100055	Ga0244165_100055189	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDNYCIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLDDWVNGERRTGWNDDNMSGRGLEHLTSFVAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAAYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
Ga0244165_100055	Ga0244165_10005521	F083452	MSGRVKIKIKDKKPKIDVFKVIEIRFKNMNELRDLIDMDPRKGLVRIRDGTGFREVERGGCLHRNYLNLLEEELGAKLSIDLIERYIKR
Ga0244165_100055	Ga0244165_10005528	F057001	VYQIPIQAPRVRANLMTNKELNKVQNEVKKASEKTLTGAVKAWCNLFKSGKEINEILKDNDIKVDKAIVPALVALARDKEVVIQLCKDILPRVDETFCAYKEIERIYLDKQDQDRNTKLSEDKVAEISITGKAHKRFGYNEPVEYEGGVYYEVFNGSDKRIVKCAVPIKRYTFALIAKCVTYYLTHPKNER
Ga0244165_100055	Ga0244165_10005539	F078006	MLNQALAGRKEYHDRTCADMVRGRFPAPWHNLNVSSMEDNILKRAAAELKGAGCRVFAWQDDTYNRDWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0244165_100055	Ga0244165_10005541	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEPRVLCDNGKGDRPIVVMVEDDNANDYIILRYNETGRRNINGKSSLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIGGYIYLQGSSKSNVSYYVGRLEGDGCFDELCEKIRVKRDRIYNMEIISLSDDKATV
Ga0244165_100603	Ga0244165_10060314	F093883	MIIMRNMEDKDIKTEIRDYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEDDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNDFKDMKANATGKTKADE
Ga0244165_100603	Ga0244165_1006038	F089592	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGMDKDEVDRLVNQRVNNIMKPFEDISQKDLSQTNLEFWDDAKDKIFMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFINALKKGGKERQAVIDLLLYIGIVTRPDFTEDDYYTGSLSNWMNEKKTNIDYLLDIWDRSLEGDFEEVLEFYRIINVLQRNGRINMTPSGLQYNGQIIGPDTRTSAEFLATKKDLISVKANVLDEYEELMSISNIDDKTKKVKDVKKKEDVDEGGKVNTEE
Ga0244165_103047	Ga0244165_1030475	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL
Ga0244165_103311	Ga0244165_1033111	F068941	MENNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLNG
Ga0244165_114915	Ga0244165_1149152	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLRANQYKLYPLLLDILEISLKDDYYNYSNTSNIHYEGGKFPSMLTIQLFNLDF
Ga0244165_130098	Ga0244165_1300981	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVKAYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVNFAMNFTDGEANIKSINRISSN