3300029455: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001918-109

Overview

Basic Information

• IMG/M Taxon OID: 3300029455
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133130 | Gp0283337 | Ga0244160
• Sample Name: Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001918-109
• Sequencing Status: Permanent Draft
• Sequencing Center: Beijing Genomics Institute (BGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71385370
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Shanghai Jiao Tong University, China
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: China: Shanghai
• Coordinates
  • Lat. (^o): 31.2123446
  • Long. (^o): 121.4684853
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067720	Metagenome	125	Y
F088914	Metagenome	109	N
F090514	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0244160_100424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	28113
Ga0244160_102611	Not Available	3167
Ga0244160_109081	Not Available	1027

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0244160_100424	Ga0244160_10042420	F090514	MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADVLPRLTGAKWFVILLTIVPAGSRTRAGSSLPLIPASNIFLKQTPRRGLPLA
Ga0244160_102611	Ga0244160_1026113	F067720	MASTTYHHLGDVTEMYAAQEQFRHVTKMVCARLRGLTKTYHFAVLGNMVRNAGQLPQPFWLGAACGGGSRSAARCAART
Ga0244160_109081	Ga0244160_1090812	F088914	VGRILPVCNGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENRKNPGKFIVFSAWHAAKALEMDVK