3300029447: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_28_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029447
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283060 | Ga0243899
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_28_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 302823872
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044555	Metagenome / Metatranscriptome	154	N
F055715	Metagenome	138	N
F089005	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243899_1034314	All Organisms → Viruses → Predicted Viral	1332
Ga0243899_1044951	Not Available	1032
Ga0243899_1063146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	747

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243899_1034314	Ga0243899_10343143	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPNLEKPIEIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0243899_1044951	Ga0243899_10449511	F055715	LTKSNEFDKINELLIERTAKKFERASKNKLKKFLTNEKFCDKINELIRVGTAEILDN
Ga0243899_1063146	Ga0243899_10631461	F089005	LTKSKQRSIITLALLRLATSNEESKQALKVRRTLKIEQRDNSKETRNDFEGSSKNYSEMYTKKHHKLRI