3300029441: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 029_10_30_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029441
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282914 | Ga0243753
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 029_10_30_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 272983430
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F044554	Metagenome	154	N
F055775	Metagenome	138	N
F056682	Metagenome	137	Y
F059106	Metagenome	134	N
F087334	Metagenome	110	N
F088914	Metagenome	109	N
F097172	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243753_1001744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	28400
Ga0243753_1002110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	22955
Ga0243753_1021611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1359
Ga0243753_1022907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1279
Ga0243753_1038190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	771
Ga0243753_1044993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	659
Ga0243753_1047221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	630
Ga0243753_1048044	Not Available	620
Ga0243753_1056617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	527

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243753_1001744	Ga0243753_100174410	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKVF
Ga0243753_1002110	Ga0243753_10021103	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVVTAEAATRKVTSAYKHHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLNNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYEYKTDFVNTIPTTKIKFTTKLKKGQTYVFIIDNIGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0243753_1002110	Ga0243753_10021104	F097172	MKKNVLKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPSVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTLDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTILDNYKEEHPEYADVIEETYSDETDFVNKYPIDKDKFTTKLKKGQTYVFVIDNRGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK
Ga0243753_1021611	Ga0243753_10216111	F087334	FVGAVAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDFFLYRAASLFEYREKHP
Ga0243753_1022907	Ga0243753_10229072	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQSLFSSLLFVSDTLAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL
Ga0243753_1038190	Ga0243753_10381901	F059106	RVILLQTFVWIVDLKVREHLTEYLKKDIKYHRVIIGVLV
Ga0243753_1044993	Ga0243753_10449932	F026592	SPQGIAALAAQGGVATLTERSDATFSVGQFSSADRE
Ga0243753_1047221	Ga0243753_10472211	F056682	MKMQSRAGKVANQSIRQGEMYPASFWAFPSKNRSTFPIQELRKN
Ga0243753_1048044	Ga0243753_10480442	F055775	MAQIAQQDNLVIEVATTAAELDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINTNSGAVKAIALN
Ga0243753_1056617	Ga0243753_10566172	F088914	GANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFTVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK