3300029439: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_30_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029439
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0283065 | Ga0243904
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 075_4_30_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 228376454
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y
F066905	Metagenome	126	Y
F074899	Metagenome / Metatranscriptome	119	N
F076189	Metagenome	118	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243904_1007155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4521
Ga0243904_1028144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1150
Ga0243904_1030017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1084
Ga0243904_1040328	Not Available	836

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243904_1007155	Ga0243904_10071556	F039198	MQITNTEIQGTKYVQIYLTEDELQKKETKDLVKKYKQEKYSVAIFVSGKENYPEILEKIITKQVELNRNVC
Ga0243904_1028144	Ga0243904_10281441	F074899	MSGRKQWNKQAVTSSFLDKKPPESLILQGLEGSTTLGKDEVGSSNLPSSSKKASKT
Ga0243904_1030017	Ga0243904_10300171	F076189	LKKRINHFKTMQRPAGCVICRALFFISFPPFIKPLLYVEKLQIGTVLPVVPDLYREFSEISVCFDLCAVQSAQKQL
Ga0243904_1040328	Ga0243904_10403281	F066905	YIENLKEENFMPEESRDCGCGRNNNCLSNLFGGCGCGDSSILFFIIIFLLLFCNCGCNR