3300029436: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 048_3_10_stool_1

Overview

Basic Information

• IMG/M Taxon OID: 3300029436
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282994 | Ga0243833
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 048_3_10_stool_1
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 239244350
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F029444	Metagenome	188	Y
F047125	Metagenome / Metatranscriptome	150	N
F047126	Metagenome	150	N
F081354	Metagenome	114	Y
F087336	Metagenome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243833_1004732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	8413
Ga0243833_1007456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	5332
Ga0243833_1025366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1446
Ga0243833_1025667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1428
Ga0243833_1042199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	841
Ga0243833_1047209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Blautia → Blautia wexlerae	750
Ga0243833_1048352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	732

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243833_1004732	Ga0243833_10047322	F081354	LVCENQQSSAHNFVKDFSSIFLKSSRRSPLKKGAVATIPLEYGKAEVQTLFEPLQATISSMELPKNFENKKLPNTLRRLAFLPFHL
Ga0243833_1007456	Ga0243833_10074563	F081354	LVRENQQSSAHNFVKDFSLIFLKFSRLCPLKKGAATENPLEYGKTEVQILFEPLQAAISSMELPKNFENKKLPNPLR
Ga0243833_1025366	Ga0243833_10253662	F047125	MDVVLLLMVLGVMLSGFWAADALDHLRKEIIRQEGKRRGWWS
Ga0243833_1025667	Ga0243833_10256672	F026489	LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSCLFGVKVF
Ga0243833_1042199	Ga0243833_10421992	F047126	MTNISQTQAGFKSKSLGILCGFQGFLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPNPLPPFAQRFIACFCSQTAAASQSKSAYILSSLESPCILCSLLR
Ga0243833_1047209	Ga0243833_10472092	F087336	MVAELEQVPKAFRAADNQRRAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLGIAFQILP
Ga0243833_1048352	Ga0243833_10483522	F029444	MEVSEQLTGFEPEDLMSWTVSNLRRPFREDFSLEKSGIIAEKGAQIFGRRFVGFDGPKKAAPFFNF