3300029435: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 027_10_29_stool_2

Overview

Basic Information

• IMG/M Taxon OID: 3300029435
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133117 | Gp0282906 | Ga0243745
• Sample Name: Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 027_10_29_stool_2
• Sequencing Status: Permanent Draft
• Sequencing Center: Institute for Genome Sciences, University of Maryland School of Medicine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 226643708
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Baltimore
• Coordinates
  • Lat. (^o): 39.28846264
  • Long. (^o): -76.62594594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F026592	Metagenome / Metatranscriptome	197	Y
F047125	Metagenome / Metatranscriptome	150	N
F052660	Metagenome	142	N
F068941	Metagenome	124	N
F076189	Metagenome	118	N
F087335	Metagenome	110	N
F088920	Metagenome	109	Y
F092228	Metagenome	107	N
F097172	Metagenome / Metatranscriptome	104	Y
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0243745_1000060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	146159
Ga0243745_1000401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	54256
Ga0243745_1001116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	25841
Ga0243745_1001306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	23019
Ga0243745_1004553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7718
Ga0243745_1005642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → Roseburia faecis	6210
Ga0243745_1009146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens	3829
Ga0243745_1010227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3411
Ga0243745_1020479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1651
Ga0243745_1021526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1567
Ga0243745_1024710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1365
Ga0243745_1034741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	964
Ga0243745_1062140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	546

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0243745_1000060	Ga0243745_100006023	F092228	MKKKCTLVLISVLTVACVVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNFLYCYTINYILPRGVADLWVKGYLIDQLAIS
Ga0243745_1000401	Ga0243745_100040135	F087335	MIELYFNDANLLPENREEEQYAEAALNNILAGKTADTEMCIPPCFYDAPLHKGLLYHLNDGTTLRIRPVLNEAGEPELLIRCITEESVETVYQRVANYD
Ga0243745_1001116	Ga0243745_100111618	F047125	MDVALLLMVLGVMLSGFRAADALDHMRREILRQEGKRRGWWS
Ga0243745_1001306	Ga0243745_100130617	F097172	MKKNVFKKMMCAVLAAACVATAVVPAMADDVVTAEAATKKVTSAYRYHLEGYDKNGYPVNGFSKTSFYKDLNSLPSIKVGKTTINVPAVTSSVKSVSKEKDNPEYVTYVKFKALKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQVSKTGKKYCLNSIEDSDTIGKYDTLYENNYLARLRTILDNYKTEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQTYVFSVDNRGMAKAVPPYFTTHGSNEQSCLWGGNYLKAYSFDMNIEYRK
Ga0243745_1004553	Ga0243745_10045537	F052660	MCILRVLSENTPEKIGQERAGIEWTVVKSKIRLCIRNRSYGQFLHGGILMGIVLPIPSHRAKSHDFAYWWPAAAGHSRSADALPGKSNS
Ga0243745_1005642	Ga0243745_10056423	F097172	MKKNVFKKLMCAVLAAACVATAVVPAMADDVITAEATTKKVTSAYRYHLEGCDKNGYPVSGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSNVKSVSKEKGKPEYVTYVKFKALKTGKYVVTLDNLQGTDDKTLRCMMYCDFYQVSKTGKKYCLNSIEDSDTVGKYDTLYENNYLARLRTILDNYKEEHPEYADVIEETYSDETDFVNKYPIDKIKFTTKLKKGRTYVFSVDNIGMQKAVPPYFTTHGSNEQSCLWGGNYLAAYSFDMNIEYRK
Ga0243745_1005642	Ga0243745_10056424	F097172	MKKNVLKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYRYHIDGYNKKGYPASYSKASFYKDLNSLPAVKTGKTTINVPAVTSSVKSVSKEKDNPEYESFVKFKAPKTGKYVFTLNNLQGTDDKSLKCFSGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYSDETDFVNHRPVNKIKFTTRLKKGQIYVFVIDNRGMAKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK
Ga0243745_1009146	Ga0243745_10091465	F099269	VHGVLLSVQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASGAGVDANATSDALV
Ga0243745_1010227	Ga0243745_10102275	F088920	HYPAFEAGLILHLILHLILHFSQKAAIFAPKRAFSFLFVPTLFFAGLSVLSPQTSPKISGQTSLYQPWLSPQYLFKD
Ga0243745_1020479	Ga0243745_10204791	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDSTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG
Ga0243745_1021526	Ga0243745_10215261	F076189	NHATPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL
Ga0243745_1024710	Ga0243745_10247101	F076189	LKKRINHFKTMQCPAGCVICRALFFISFPPFIKPLLYVEKLQIGTVLPVVPDLYREFSEISVCFDLCAVQSAQKQLHMLCNFHENTLGLLIFYT
Ga0243745_1034741	Ga0243745_10347412	F026489	VFHVEQGRVEEDIAERCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKII
Ga0243745_1062140	Ga0243745_10621402	F026592	NLLAADGSQNRLRTASPQGIDAQASQGSVAPLTERSDETFSVMQPFSADRE